DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk1a and dpr3

DIOPT Version :9

Sequence 1:XP_009297968.1 Gene:sdk1a / 558391 ZFINID:ZDB-GENE-081104-374 Length:2245 Species:Danio rerio
Sequence 2:NP_001014459.2 Gene:dpr3 / 3346208 FlyBaseID:FBgn0053516 Length:522 Species:Drosophila melanogaster


Alignment Length:511 Identity:106/511 - (20%)
Similarity:168/511 - (32%) Gaps:167/511 - (32%)


- Green bases have known domain annotations that are detailed below.


Zfish   300 LNVAANKKYRGSHDSEAPADPVAPVIVIPPRN----------------TTVV----AGISEATLE 344
            :|:....:..|:.|          |.||.||:                ||.|    |..:.||..
  Fly    42 INLCGFLRRSGADD----------VDVIEPRSPGHAADVDVAAAAAGATTSVAATAAAAAAATTR 96

Zfish   345 CVANARPV-------------EKLSLVWR-RNGVEVASGVGSFSRRLTIINPTSTDVGMYVCEAL 395
            ..|..|.|             ::.||:|. .||:..|:.        :...|..:..|..:...|
  Fly    97 AAATTRAVIIIMALVVSIMQQQQQSLLWPFCNGLAAAAA--------STGQPDDSGDGPTLSTFL 153

Zfish   396 LLDSSVKPAEARAFLSITEAPYFTAEPRRKMMGEVEKSVDIQCQARGVPMPKLEWYKDAVPLSKL 460
            ....|..|:...|..|.:....|::                ...|.|             |.::.
  Fly   154 SSSQSQSPSPPAASASASSPSSFSS----------------FAVAHG-------------PQTEA 189

Zfish   461 NNPRYKII----SSMGLQVRKLQPSDAGIFQCFARNSAGEAQVHTY-LDVTSMAPAFT-APPLDI 519
            .|..:|.:    :|.|..:  ...:||      .|..:|.|...:. .|.:...|.|. ..|.:|
  Fly   190 TNHTFKSLAFLDASFGSDL--FAQTDA------KRERSGAADEESQDADTSQSLPIFDFGMPRNI 246

Zfish   520 TVTDG-AVAAFTCRVSGAPKPAIVW--RRDTQILASGSVQI---PRFTLLESGG-----LQIQPV 573
            |...| ..|...|||......::.|  :||..||..|:...   .||.:.||..     |.::..
  Fly   247 TGRTGHTEAIIKCRVDSLHDKSVSWIRKRDLHILTVGTATYTSDKRFQVTESKDSREWTLHVKAP 311

Zfish   574 VLQDTGNYTCYAANSEGAINASASLTVW-----SRTSISSPPTDRRVIKGTTAILECGATHDPRV 633
            :.:|:|.|.| ..|:|..::.:..|.:.     ::..||.|| |.....|:..||.| ....|.|
  Fly   312 LAKDSGIYEC-QVNTEPKMSMAFQLNIIEISPDAKAVISGPP-DLHFKAGSAIILNC-LVQQPSV 373

Zfish   634 ---GVRYVWKKDEELVS-----------------HSRG---------------------GRISLQ 657
               |..| |.:.|.:::                 |.:|                     .||:::
  Fly   374 KDIGPIY-WYRGEHMITPFDADDGQPEIPAGRGEHPQGIPEDTSPNDIMSEVDLQMEFATRIAME 437

Zfish   658 -------EGSLHISQTWSGDIGNYTCDVISEAGNESKEARLEVIELPHSPRNLQAS 706
                   :..|.||...:.|.|||||...:.:   |....:.||. ..:|..:|.|
  Fly   438 SQLGDTLKSRLRISNAQTTDTGNYTCQPTTAS---SASVLVHVIN-DENPAAMQKS 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdk1aXP_009297968.1 I-set 125..208 CDD:254352
Ig 125..204 CDD:299845
IG_like 222..302 CDD:214653 0/1 (0%)
Ig 236..287 CDD:299845
Ig_3 322..394 CDD:290638 22/105 (21%)
I-set 323..412 CDD:254352 26/122 (21%)
I-set 416..505 CDD:254352 13/93 (14%)
Ig 436..500 CDD:299845 12/67 (18%)
I-set 510..600 CDD:254352 28/101 (28%)
Ig 527..600 CDD:299845 22/82 (27%)
I-set 605..693 CDD:254352 29/135 (21%)
Ig 610..693 CDD:299845 26/130 (20%)
FN3 697..788 CDD:238020 3/10 (30%)
fn3 800..886 CDD:278470
FN3 901..997 CDD:238020
FN3 1002..1090 CDD:238020
FN3 1100..1196 CDD:238020
FN3 1206..1301 CDD:238020
FN3 1308..1397 CDD:238020
FN3 1408..1501 CDD:238020
FN3 1507..1602 CDD:238020
FN3 1616..1722 CDD:238020
FN3 1732..1825 CDD:238020
FN3 1830..1919 CDD:238020
FN3 1931..2021 CDD:238020
dpr3NP_001014459.2 Ig 243..330 CDD:299845 25/87 (29%)
IG_like 243..329 CDD:214653 25/86 (29%)
Ig 350..464 CDD:299845 25/116 (22%)
IG_like <441..477 CDD:214653 10/38 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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