DRSC/TRiP Functional Genomics Resources

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Protein Alignment zgc:175214 and IRC20

DIOPT Version :9

Sequence 1:NP_001108199.1 Gene:zgc:175214 / 557610 ZFINID:ZDB-GENE-080303-32 Length:155 Species:Danio rerio
Sequence 2:NP_013348.1 Gene:IRC20 / 850949 SGDID:S000004237 Length:1556 Species:Saccharomyces cerevisiae


Alignment Length:80 Identity:26/80 - (32%)
Similarity:34/80 - (42%) Gaps:22/80 - (27%)


- Green bases have known domain annotations that are detailed below.


Zfish    90 CAVCLEEFKTRDELG-VCPCSHTFHKKCLLKWLEIRSVCPMC---------------NKPIMRLQ 138
            |::||.|.    |:| :..|.|.|.|.|:|.||...|.||:|               |....|.:
Yeast  1239 CSICLGEV----EIGAIIKCGHYFCKSCILTWLRAHSKCPICKGFCSISEVYNFKFKNSTEKREK 1299

Zfish   139 NPDAPR--GAEGLQD 151
            ....||  ||:..||
Yeast  1300 EIQEPRREGADSSQD 1314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zgc:175214NP_001108199.1 zf-RING_2 90..130 CDD:290367 17/40 (43%)
IRC20NP_013348.1 HepA 172..>568 CDD:223627
DEXQc_SHPRH 383..602 CDD:350828
RAD18 1234..>1327 CDD:227719 26/80 (33%)
RING-HC_RNF10 1239..1276 CDD:319450 17/40 (43%)
SF2_C_SNF 1356..1485 CDD:350180
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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