DRSC/TRiP Functional Genomics Resources

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Protein Alignment zgc:175214 and Rnf122

DIOPT Version :9

Sequence 1:NP_001108199.1 Gene:zgc:175214 / 557610 ZFINID:ZDB-GENE-080303-32 Length:155 Species:Danio rerio
Sequence 2:NP_001355302.1 Gene:Rnf122 / 68867 MGIID:1916117 Length:165 Species:Mus musculus


Alignment Length:129 Identity:78/129 - (60%)
Similarity:95/129 - (73%) Gaps:3/129 - (2%)


- Green bases have known domain annotations that are detailed below.


Zfish     9 GCLCGLGL--QHSDCDMTEEDIYRLPLNVYVIVLGIGMFIFMLSVIFCCY-LFRLKQQGTREQYS 70
            ||.|||||  .:..|.|.......||||:|:::.|.|:|:||||:||||| :.:|:.|...|:|.
Mouse    19 GCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYG 83

Zfish    71 YNEVVLKGAGKKLSLLGQPCAVCLEEFKTRDELGVCPCSHTFHKKCLLKWLEIRSVCPMCNKPI 134
            |.||||||..|||.|.||.||||||:||.:|||||.||.|.||:|||:||||:|.|||||||||
Mouse    84 YKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPI 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zgc:175214NP_001108199.1 zf-RING_2 90..130 CDD:290367 29/39 (74%)
Rnf122NP_001355302.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1625209at2759
OrthoFinder 1 1.000 - - FOG0001067
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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