DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDK5RAP2 and cdk5rap2

DIOPT Version :10

Sequence 1:NP_060719.4 Gene:CDK5RAP2 / 55755 HGNCID:18672 Length:1893 Species:Homo sapiens
Sequence 2:XP_009293383.1 Gene:cdk5rap2 / 334460 ZFINID:ZDB-GENE-030131-6392 Length:2913 Species:Danio rerio


Alignment Length:2906 Identity:622/2906 - (21%)
Similarity:979/2906 - (33%) Gaps:1248/2906 - (42%)


- Green bases have known domain annotations that are detailed below.


Human    14 GTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM-KDFENQITELKKENFNL 77
            |:|..|..|.|     |..:..:....:.|...:....|...|.|:: :|:.:.:.:....:.::
Zfish   163 GSLRRCVSLEP-----LCKVGTDRSHRSKLNSRLKAADVPAPRPRSLSRDYLDVVNKKSSLSRSI 222

Human    78 KLRIYFLEE------RMQQEFHGPTEHIYKTNIELKVEVESLKRELQEREQLLIKASKAVESLAE 136
            .|:...||.      |..:.|.|.|        ...||..||..::.:    |:|..:.|..:..
Zfish   223 SLQSVALENTDHALIRQTRPFRGST--------PAAVEKTSLVFDILQ----LLKIVQGVRFVPR 275

Human   137 AGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEKAFAGTETEKALRLRLESKLSE 201
            .|||.|..:|....                       :.|...|.....::      |:|..|.|
Zfish   276 CGGSRIPVLKHPLH-----------------------SHANTHKGGVSWKS------RVERNLRE 311

Human   202 MKKMHEGD---LAMALVLDEKDRLIEELKLSLKSKEALIQCLKEEKSQMACPDENVSSGELRGLC 263
            |:.....|   |...:::|.::.|   .:|..|:::...:..|.:.:.....|            
Zfish   312 MEDEFNDDYRPLKREIIVDRQNEL---SRLEQKTRQLTEELNKAKNNGQTLKD------------ 361

Human   264 AAPREEKERETEAAQMEHQKERNSFEERIQALEEDLREKEREIATEKKNSLKRDKAIQGLTMALK 328
            |....|||:                    :||.::|:::|.|::|||||||||||||||||:.||
Zfish   362 ALDEMEKEK--------------------KALSDELQKREIELSTEKKNSLKRDKAIQGLTLFLK 406

Human   329 SKEKKVEELNSEIEKLSAAFAKAREALQKAQTQEFQGSEDYETALSGKEALSAALRSQNLTKSTE 393
            .|||::|:|:.::|:...|.|||||||.||:.|::.|:||.::.|..::|..:.|:::..:...|
Zfish   407 EKEKEIEDLSGDLEEKDQALAKAREALHKAKLQKYHGAEDQQSLLLEQQAELSRLQAEAHSSLLE 471

Human   394 NHRLRRSIKKITQELSDLQQERERLEKDLEEAHREKSKGDCTIRDLRNEVE-------------- 444
            ..||:|.:.....|||.|||.:.:||::||:..::|.|||.||.||:|:::              
Zfish   472 AQRLQRVLGSRDSELSLLQQAKLQLEQELEQLQQQKKKGDKTINDLQNQLKKLNGTLADRENALD 536

Human   445 -----------------------------------------------------------KLRNEV 450
                                                                       |||..:
Zfish   537 QQRLEQQEQIRASEQKMQNAMERLTASLNHKDQQLQDYMNMVRDLEKNRSQEEGDPMLAKLRARL 601

Human   451 NEREKAME-------------------------------NRYKSLLS------------------ 466
            .|:|||:|                               .|..:|||                  
Zfish   602 KEKEKALEKALDEKFAAVEEKENEIHLLQLSLREKERDVERLNNLLSHNEETINSFDAVIKERDL 666

Human   467 -----------------ESNKKLH----NQEQVIKHLTES------------------------- 485
                             |:.:.||    .::.:|:||.::                         
Zfish   667 ELQQLLNSLKNLQRSKDETEENLHRALREKDAIIQHLQQALDNKTKDMEEMANRVLNQSESQGRD 731

Human   486 ----------------------------------------------------------------- 485
                                                                             
Zfish   732 LAEQMSQRLKVTEAMLSEAVKDRERLVTENQTAVENLLATISSKDQLLKESMERHTHTLSDRSAE 796

Human   486 ---------------------------------------TNQKDVLLQKF----NEKD------- 500
                                                   .::||.|:.|.    .|||       
Zfish   797 MLDLRKQLSDTQQQLRNAQRLNAAATQDGHLEIAELRAMLSEKDALINKLLERGQEKDRSILFEM 861

Human   501 ----------------LEVIQQNCYLMAAE----------------------------------- 514
                            :|::|:......||                                   
Zfish   862 KSGEAPPPQVLELRQTIELLQEKLEEREAELSRRNSEEMLDVDAVTKKSAVLLKRELLQKTDALN 926

Human   515 ---------------------DLELRSEG-----------------LIT---------------- 525
                                 :||.|.||                 :||                
Zfish   927 AALKRENQLKISLAELQSSLSELEARLEGQTANIESLTSTLNTKEEIITELHHRLSQRGDSRVPL 991

Human   526 -----------EKCSSQQPPGSKTIFSKEKKQ---------SSDYEELIQVLKKEQDIYTHLVKS 570
                       |...|..|....||...:::|         .|:..||.:.|:.||.:|:.|:::
Zfish   992 TRDQASQLGESEYSPSSLPQRETTIIGGDRQQLDVASLSDLRSEQAELNRALRAEQHLYSDLIRA 1056

Human   571 LQESDSINNLQA---ELNKIFALRKQLEQDVLSYQNLRKTLEEQISEIRRRE------------- 619
            ::|.||:..||.   ||..:..||:|||..|.....||..|:.:|...::||             
Zfish  1057 VKERDSVERLQVLQLELTAVALLRQQLESGVQMNSELRDQLQTEIHRTKQREGSNPSELQTLRDA 1121

Human   620 -EE------------------------------SFSLYSDQTSYLSICLEENNRFQVEHFSQEEL 653
             ||                              :.|:..|||||:|||:.|....::.|.:.::|
Zfish  1122 LEEAQRWNVSLQARLGQIQNRGGGVGQANDSVDTLSMIGDQTSYMSICVGEGPEEELLHMTVDQL 1186

Human   654 KKKVSDLIQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRL---------------ASTEQTEL 703
            :.||.:|..:..||......|:|.....:.:|......||.:               .|.|...|
Zfish  1187 RLKVLELEAVNAELQKKLVLLEKDTVGNAPIGSHSQKEPDLIDLSTPTKQPQRQQKPTSEEGASL 1251

Human   704 LASK-----EDEDTIKIGEDDEINFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAH 763
            |||.     ||.|.   ...|.:.......:|:....::..||...........:|.:||| ||.
Zfish  1252 LASNVKERCEDGDR---SSKDRVKMNQPSQMQKQLSAVQPTSKFPGDESEKAELKSLLSDC-GAE 1312

Human   764 APGCLEEGAFINLLAPLFNEKATL--LL------------------ESRPDL---LKVVRELLLG 805
            :...|.|     .:|.|.:|.:.|  ||                  :|..||   :||:|.....
Zfish  1313 SVSQLRE-----QVAKLRSEASELRGLLKEENATESKESAESSGESDSHGDLHHTVKVLRSEARS 1372

Human   806 Q----LFLTEQ------------------------------------------------------ 812
            .    .||.||                                                      
Zfish  1373 HRKIIRFLKEQLERNSDGVTQLDTKVMVSMAGNVEQLQTQHEESQRHASTLEKKQREGTEMEDKD 1437

Human   813 ------------------------------------------------EVSGEHL---------- 819
                                                            ||:.:|:          
Zfish  1438 ERRRHVRSTKPSKSQKQNMARHAAYVKSRLPVPVRSSRSTGQSSEDLSEVNSDHIQPKRKDHQTG 1502

Human   820 --------DGKTEKTPKQKGEL------------VHFVQTNSFSKPHDELKLSCEAQLV------ 858
                    |.|......|||.|            ....:.::::..:.|.:|..:.:|:      
Zfish  1503 AEESDYSTDSKMSSRSSQKGHLELDQVKDARLSPTSGTKQDNYTDDYLESELMAQLELLNQECQE 1567

Human   859 ----------KAGEVPKVGL----KD-----------ASVQTVA--------------TEGDL-L 883
                      :..|:.::.:    ||           |:..|:|              ..||: |
Zfish  1568 KEELISHLKQQVQELDELQVELQKKDKLNREYLEALQAAESTIAYLTACSLDSECGIGQTGDVTL 1632

Human   884 RFKHEATREAWEEKP-INTALSAEHRPENLHGVPGWQAALLSLPGI--TNREAKKSRLPILIKPS 945
            :.:....::|.|||. :||.|        |..:...::|:.||..:  |.|:..:.:....:...
Zfish  1633 QQRCAELQKAIEEKDRVNTQL--------LECLNTAESAIASLQNVDTTTRQMDQGQADPKVLCE 1689

Human   946 RSLGNMYRLPATQEVV------------------TQLQSQILELQGELKEFKTCNKQLHQKLILA 992
            |..|.:.::..:|:.:                  :.|:.|:..||..:.:....|.:|.:||.::
Zfish  1690 RLEGLIIQVKTSQQNIDGTKDLQRLDIETKLGLNSDLRQQVDALQESVLQQCKLNSELQEKLWIS 1754

Human   993 EAVME-------GRPTPDKTLLNAQPPVG--------------------AAYQD-----SPGEQK 1025
            ||..:       |.||..:..|...|..|                    .|.|.     |...|.
Zfish  1755 EAAFKKLSSTKNGAPTDLEGNLTPGPQEGKVQSRQQLTDCLSKCITAAEGAVQSLADVCSKSNQS 1819

Human  1026 GIKTTSSV----W--------RDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSV 1078
            .::..||.    |        .|:||..|                    |.|.|......| |.:
Zfish  1820 HMENLSSTELQQWLEMLRCALLDREMLED--------------------PDCIEKHHHKTS-TPI 1863

Human  1079 ATYLSSKSQPSAKVSVMGTDQS--------ESINTSNE------------------------TEY 1111
            ....|||||..:.:....|.|:        ..|:|.:.                        ||.
Zfish  1864 QNSESSKSQQQSNILDSNTHQNLHKNLLMLLQIHTEHAQKMAKLEKDLSRCGQNAGGGDAPGTEN 1928

Human  1112 LKQ--KIHDLETELEGYQNFIFQLQKHSQCSEAIITVLCGTE----------------------G 1152
            |::  :|..|:..|:..|....:|::....::::|.|...:.                      .
Zfish  1929 LERNAQIESLQKALKERQRACQKLEEKLALAQSVIAVHNASNKDKHSDQNKAPPGERDDKGVQVE 1993

Human  1153 AQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPL--------APEM---------------- 1193
            ||| |....:|....|:..||......::.|..|.|:        :|:|                
Zfish  1994 AQD-LGYETSGRSETEVEGSSTDVDGVLRLVPALSPVLSGPQDRFSPDMSTTSSPSYPSSPGLSS 2057

Human  1194 -------IDS---------------RVLENLKQQL-------------------EEQEYKLQKEQ 1217
                   .||               ||:::|::||                   ||:|.|:.|.|
Zfish  2058 PRPSEPHADSNMHIQQLRSQIEGQHRVIQHLQRQLRKKSLSSELLSVTSDLTAGEEEETKMMKAQ 2122

Human  1218 --NLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQIKDGHGICVISRQHMNTMIKA 1280
              .||.:|..| .:|....:..||.|.:||||||||||...|:||:...|:.:..|:.:..:..|
Zfish  2123 IAQLNTELERE-RSLNRSSQPGSPSRIESLVQSQARELCELREQIRVSRGLGLEQRKQLLELRGA 2186

Human  1281 FEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGKSVGVEMNTQNELM------------ 1333
            .|:|||.:|:........:|||::...|||:||::...|.:|..|...::|:|            
Zfish  2187 LEDLLQPTDMHSDQGAQLREQLDRSLSLLERLEQVSTGGVAVENEEGAESEMMLSDCDWVFEELQ 2251

Human  1334 ----------------------------------------ERIEEDNL--TYQHLLP-ESPEPSA 1355
                                                    |..|:|.|  ..||.|. ::|.   
Zfish  2252 CLRSQIEGDRDQQQLQMVYLCRQNQNLAISTQHYVDLLSAELQEKDKLIQALQHQLQIQAPR--- 2313

Human  1356 SHALSDYETSEKSFFSRD----------------------------------------------- 1373
            .|..||.|.|::  .|.|                                               
Zfish  2314 MHLHSDSEMSDR--LSNDGTSSCQDSPPSLCRHTPGRPHTGPKATNGDAFTDTGLVSGGRASEGG 2376

Human  1374 ------------------------------------------------QKQDNETEK----TSVM 1386
                                                            |.||.:.||    ||..
Zfish  2377 VADGAEPRVRILQRENCRLQEQLRSSEELNTTLRSELDLTRSIIKHSPQTQDKQPEKQNTYTSKT 2441

Human  1387 VNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQ--GSEFVQGSTSIFASGSELHSSLT 1449
            :||   |||.||:||||.||:||||:|:|||:||:|||::  .:|....:|:||.:|||..|.::
Zfish  2442 INS---DLLAEHLQEIRALRQRLEETIRTNERLREQLEKKLLEAEKDPAATNIFIAGSEDQSHIS 2503

Human  1450 SEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYASVKEENERLQKEGSE 1514
            ||:|||..||.:|...|.:|:||||||||:|||:|:|:|..||..:.|..::|:|..:||     
Zfish  2504 SELHFLLAQNHSLKEQLNQGARDKQKENDRLRETLARRTAKLEMSRNECETLKQERLQLQ----- 2563

Human  1515 KERHNQQLIQEVRCSGQELSRVQEEVKLRQQLLSQNDKLLQSLRVELKAYEKLDEEHRRLREASG 1579
                            ..|.|:|.|...::|.||...:||||:||||:.:|.:...|.:    ||
Zfish  2564 ----------------DNLYRLQCENSHQRQQLSDTQQLLQSVRVELQVHEHMKSTHTQ----SG 2608

Human  1580 EGWKGQD---PFRDLHSLLMEIQALRLQLERSIETSSTLQSRLKEQ-LARGAEKAQEGALTLAVQ 1640
            ||.....   ...|:..||.||:.||:||||||:.:|||:.||::| |:|..:            
Zfish  2609 EGRSSSSAGGSAVDMSELLAEIRQLRVQLERSIQINSTLRQRLEQQLLSRRTD------------ 2661

Human  1641 AVSIPEVPLQPDKHDGDKYPMESDN-SFDLFDSSQAVTPKSVSETPPLSGNDTD-SLSCDSGSSA 1703
                               |..:.| ::.|..:.:||....:.....:|..:.| ..|.||||:|
Zfish  2662 -------------------PKSTININYLLSKTDEAVKSDVLHLQTDVSSAERDGGSSADSGSNA 2707

Human  1704 TSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQISQGQRLLAEMDIQTQEAPSSTSQELGT 1768
            .     ||||.||.|||.:.|||||||||||.||.|||::.:||.|:::.|..:...|..|    
Zfish  2708 P-----SRLVPGHRLWADRRGRHVLGLIEDYNALRKQITEAKRLTADLETQIHDCGRSVDQ---- 2763

Human  1769 KGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLLWRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLF 1833
                   |......|:|.:..||||.|.||||||||:|..   ..|.:|...:::|:::|..:|.
Zfish  2764 -------LKSVSGGVNTMQQVLEEAARLLKLLWRVSVPSG---DTHSQQDDMLQSEISRLKSRLS 2818

Human  1834 EQEKKLQNTMKLL----QLSKRQEKVIFDQLVVTHKILRKARGNLE 1875
            :||:.|...:|.|    ||.:..|:||.|||.:||.:|::||||||
Zfish  2819 QQERMLSGAVKRLRSTNQLKEGMERVIIDQLSLTHGVLKRARGNLE 2864

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDK5RAP2NP_060719.4 CM1 motif, interacts with the gTuRC. /evidence=ECO:0000269|PubMed:39321809 51..94 9/49 (18%)
Interaction with NCKAP5L. /evidence=ECO:0000269|PubMed:26485573 58..196 24/144 (17%)
Cnn_1N 61..129 CDD:462333 14/73 (19%)
Smc 146..>458 CDD:440809 97/387 (25%)
Smc <401..>621 CDD:440809 88/644 (14%)
Interaction with MAPRE1. /evidence=ECO:0000269|PubMed:19553473 926..1208 76/466 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1015..1071 14/72 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1084..1105 7/28 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1347..1381 12/129 (9%)
Smc <1392..>1641 CDD:440809 105/254 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1500..1521 4/20 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1646..1706 13/61 (21%)
Interaction with PCNT and AKAP9. /evidence=ECO:0000269|PubMed:20466722 1726..1893 64/154 (42%)
Interaction with CDK5R1. /evidence=ECO:0000250 1726..1768 20/41 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1754..1774 3/19 (16%)
Required for centrosomal attachment, Golgi localization and CALM1 interaction 1861..1870 3/8 (38%)
cdk5rap2XP_009293383.1 SMYLE_N 1..>102 CDD:465822
SMC_prok_B <303..1002 CDD:274008 123/739 (17%)
EnvC 914..>1160 CDD:443969 43/245 (18%)
COG2433 <1312..>1443 CDD:441980 18/135 (13%)
SMC_prok_B <2388..>2652 CDD:274008 110/291 (38%)
Blue background indicates that the domain is not in the aligned region.

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