DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KDM4D and kdm4b

DIOPT Version :10

Sequence 1:NP_060509.2 Gene:KDM4D / 55693 HGNCID:25498 Length:523 Species:Homo sapiens
Sequence 2:NP_001076274.2 Gene:kdm4b / 556504 ZFINID:ZDB-GENE-060503-664 Length:1134 Species:Danio rerio


Alignment Length:376 Identity:249/376 - (66%)
Similarity:302/376 - (80%) Gaps:11/376 - (2%)


- Green bases have known domain annotations that are detailed below.


Human    11 AQNPNCN---IMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIA 72
            |..|..|   ||.|.||.|||.||.|||||||:||||.|||||:|||||||.|.:|:.|.:::|.
Zfish    85 APPPGANFNKIMTFRPTMEEFKDFGKYIAYMETQGAHVAGLAKVIPPKEWKPRRSYETIEDMVIP 149

Human    73 TPLQQVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNSPIYG 137
            .|:.||.:|::|:||||:.:||:|||||||.|||||||.||.|::|:|||||||||..:.|||||
Zfish   150 APIMQVVTGQSGLFTQYNIQKKSMTVGEYRKLANSKKYNTPQHKDFDDLERKYWKNLTFVSPIYG 214

Human   138 ADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSIN 202
            |||||||:|.:..:||:|||.|:.|::|:|||:||||||||||||||||||||||||||||||||
Zfish   215 ADISGSLYDPDISEWNIGHLNTLLDMVEQECGIVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSIN 279

Human   203 YLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQE 267
            |||.|:||:||.:|||||:||||||:..|||||:||.||||||:.||||::||:..|||:|||||
Zfish   280 YLHFGKPKSWYAIPPEHGKRLERLAQGFFPGSSQGCDAFLRHKMTLISPSILKKYSIPFDRITQE 344

Human   268 AGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCSCGEARVTFSMDAFVRILQPER 332
            .||||:||||||||||||||||||:.||||.|||||||||:||:|.:..|..|||.|||.|||||
Zfish   345 EGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDYGKMAAQCTCRKDMVKISMDVFVRRLQPER 409

Human   333 YDLWKRGQDRAVVDHMEPRVPASQELS-------TQKEVQLPRRAALGLRQ 376
            |..||:|:|..|:||::|...:|.||.       |.:|..| |||...::|
Zfish   410 YTQWKQGKDTMVLDHLKPTSLSSPELEHWRKNRVTFREKVL-RRAQAKMKQ 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KDM4DNP_060509.2 JmjN 18..58 CDD:128818 31/39 (79%)
JmjC 179..295 CDD:396791 92/115 (80%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 407..523
kdm4bNP_001076274.2 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.