DRSC/TRiP Functional Genomics Resources

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Protein Alignment znrf3 and plr-1

DIOPT Version :9

Sequence 1:NP_001295484.1 Gene:znrf3 / 556813 ZFINID:ZDB-GENE-070705-263 Length:866 Species:Danio rerio
Sequence 2:NP_499473.2 Gene:plr-1 / 176575 WormBaseID:WBGene00023404 Length:487 Species:Caenorhabditis elegans


Alignment Length:464 Identity:117/464 - (25%)
Similarity:192/464 - (41%) Gaps:100/464 - (21%)


- Green bases have known domain annotations that are detailed below.


Zfish    26 SVLAKDTAFVE---VVLFESSPNGDYT--TYTTGLQGRFSRAGATISAEGEIVQMHPLGLCN--- 82
            :.||....|.|   :.:..::.|.|.|  ..|..|.|.||..|:.....|:|||:.....|:   
 Worm    28 TTLASQFKFAEKADIFVTHTNINEDRTQDEKTIKLSGTFSPVGSNYETGGDIVQVSSFRACDARR 92

Zfish    83 NNDEEDLYEYGWVGVVKLEQPE-LDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSE 146
            ...:..::|:  |.||..:..| ....|:.:..:|:.|.:.||.|:|...:...:...:...:..
 Worm    93 KGLDNTVFEH--VPVVFYDDVEKFLTGCVALDNQARFAEKSGAMALIVGPASRVERTTRPMMIGG 155

Zfish   147 DPLKRPVVYV--KGTDAVK--LMNIVNKQKVARARIQHRPPRPTEYFDMGIF--------LAFFV 199
            .  |.||:.:  :.|:.::  |.:...:..|.:.||.....:||:...:.:|        |...:
 Worm   156 S--KIPVIVLDDEQTERLRSELRSASERGAVTKLRISFIDEKPTKVLKLQVFRPTVLNITLLGLL 218

Zfish   200 VVSLVCLILLIKIKLKQRRSQSSMNR------MAIQALEKMETCKFK-----------------A 241
            ::.:|.:.||:.:|:   |.|.:|:|      :|..||.|||...|:                 |
 Worm   219 IILIVFVSLLVVVKI---RCQPTMHRELWLRALARTALTKMEIRSFQKEKNVEAGQKKKTSSTFA 280

Zfish   242 KFKGQREASC---------GASDSVSSSSTSD----CAICLEKYIDGEELRVIPCAHRFHKKCVD 293
            :.|..|.:|.         |:..||:.||:..    |.||||:|.:|.||||:.|.|.||.||||
 Worm   281 RLKQHRSSSSRHSSYLAVFGSLTSVAQSSSHSAQERCVICLEEYEEGTELRVLFCGHEFHPKCVD 345

Zfish   294 PWLLQHHTCPHCRHNIIDQKKGNPGAVCLDPGNPVHGRQQRV--VLPVHYPGRVHRAGQVTAYPT 356
            ||||....||.|:.:::  .|..|.   :|....:.||....  :||     |...:..:.:.|:
 Worm   346 PWLLSKRRCPLCQFDVV--YKHYPK---VDSPEKLSGRSDDTTSLLP-----RTSPSEDLPSAPS 400

Zfish   357 RTSMDPHGNPITVLTVDQHPEQGLYPSQSSFIRGYPALHLDHTLNPHHCGLEHRGPAYPQTHTF- 420
            ..|        |.||........|.||.:.     |:.|...:|.          |..|:|.:. 
 Worm   401 SRS--------TRLTRPYRTTHHLIPSSTR-----PSSHQRPSLQ----------PTAPRTRSCP 442

Zfish   421 KRPKFHGRN 429
            :|.:...||
 Worm   443 RRRQLRSRN 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
znrf3NP_001295484.1 zf-RING_2 265..306 CDD:290367 25/40 (63%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 790..811
plr-1NP_499473.2 zf-rbx1 305..358 CDD:289448 28/52 (54%)
zf-RING_2 317..357 CDD:290367 25/39 (64%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D138786at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto15676
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R768
SonicParanoid 1 1.000 - - X4852
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.950

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