DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pld1a and Pld

DIOPT Version :9

Sequence 1:NP_001153567.1 Gene:pld1a / 556641 ZFINID:ZDB-GENE-031002-2 Length:1022 Species:Danio rerio
Sequence 2:NP_001137610.1 Gene:Pld / 35554 FlyBaseID:FBgn0286511 Length:1364 Species:Drosophila melanogaster


Alignment Length:1196 Identity:443/1196 - (37%)
Similarity:630/1196 - (52%) Gaps:206/1196 - (17%)


- Green bases have known domain annotations that are detailed below.


Zfish    17 DAEDEPEEVDFDFNPSGASR--IGFSAIY-RTVGFKDTEAHVYLTSLPITAKILDVERFTRTQDR 78
            :.:|:.||.|.:.|.|...|  |.|::|| .:|.|...:..|::....|..:|:|.||...|.  
  Fly   185 ETDDDEEEFDDEENNSVVLRHEIPFTSIYGPSVKFNSFQRKVFIPGREIHVRIVDTERSVTTH-- 247

Zfish    79 FKFSKHRSVSKAMPAVFKIELKHGNFTWIVKRKEKHFMELHRELLKYKTLMRIPLPTRSHTERRK 143
                      ...|.::.|||.||.|.|.:||:.|||..||::|..::|.:.||.|:|||.|:|.
  Fly   248 ----------LLNPNLYTIELTHGPFKWTIKRRYKHFNSLHQQLSFFRTSLNIPFPSRSHKEKRT 302

Zfish   144 SIK--------RSEVRQMPA--------------------------------------------- 155
            ::|        .|.::.:|:                                             
  Fly   303 TLKATAREMADESTLKDLPSHTKVKQTSTPLRAEGRSSKIAGSNANNAMAMISPNHSSILAGLTP 367

Zfish   156 --------------LPRGGGDGE-LAREEQVSSRRKQLEDYLNKLLKMAMYRKYYATMEFIDVSQ 205
                          |||.....| |...|.:|.|.|||||||..||.:::||.::.|:.|::||.
  Fly   368 RRIQKKRKKKKKRKLPRFPNRPESLVTVENLSVRIKQLEDYLYNLLNISLYRSHHETLNFVEVSN 432

Zfish   206 LSFIQDLGPKGLEGIVYKRSGGHRIPGM-----------NCCGH------NEVCYRWSKRWLIVK 253
            :||:..:|.||.||::.||:|..| ||.           |||..      :.||..|..||..||
  Fly   433 VSFVPGMGIKGKEGVILKRTGSTR-PGQAGCNFFGCFQKNCCVRCNYFCSDVVCGTWRNRWFFVK 496

Zfish   254 DSFLLYMKPDTGAISFVLLVDNEFSIKMDSKQTETKHGVRIENLSRKLVLKFTSYRHARWWGQAI 318
            ::...|::|..|:|..|:|.|..|.:.....||..:.|:::...:|.:|||..:.|..:.|.|.:
  Fly   497 ETCFGYIRPTDGSIRAVILFDQGFDVSTGIYQTGMRKGLQVLTNNRHIVLKCWTRRKCKEWMQYL 561

Zfish   319 ESFVRKHGKAFLRTHRFGSFAREEENIPSKWYVNGKTYMEDVANALEEAKEEIFITDWWLSPEIF 383
            ::....:.:.|...:...|||....|..:.|||:|..||..||:.||.|.|||:|.||||||||:
  Fly   562 KNTANSYARDFTLPNPHMSFAPMRANTHATWYVDGAQYMSAVADGLEAALEEIYIADWWLSPEIY 626

Zfish   384 LKRPVVEGNRWRLDCILKRKAQQGVRIFVMLYKEVELALGINSEYSKKTLMHLHPNIKVMRHPDH 448
            :|||.::|:.||||.||.|||:||||:||:||||||:||||||.|||.||.. |.||||||||||
  Fly   627 MKRPALDGDYWRLDKILLRKAEQGVRVFVLLYKEVEMALGINSYYSKSTLAK-HENIKVMRHPDH 690

Zfish   449 VSSSVYLWAHHEKIVVIDQSVAFVGGIDLAYGRWDDREHRLTDVGSVTRSVAQA----------I 503
            ....:.|||||||||||||:.||:|||||.||||||..|||||:||::.|....          .
  Fly   691 ARGGILLWAHHEKIVVIDQTYAFMGGIDLCYGRWDDHHHRLTDLGSISTSSFSGSTRRTPSLYFT 755

Zfish   504 EQGLDSSTPKKKVS------------------------------------------------TSG 520
            :...||:...:|.|                                                |..
  Fly   756 KDDTDSAFGSRKSSRNAHYDTSAKERPPSPPPDEPNTSIELKTLKPGDRLLIPSTLVSSPGETPA 820

Zfish   521 NSSRSMVGDSVDLPKLKGIGRTRKTRFSLYHHIQRGLHHADSISSIDSTNKSGSVHSLQTG---- 581
            .|..::.|..::.|:::......:.:.:.....:.|......:::.::..||..|:::::.    
  Fly   821 ESGIALEGMKLNTPEMERKNVLDRLKNNAMKGARMGKDFMHRLTATETEEKSAEVYTIESEEATD 885

Zfish   582 -----------------------VGELMGNTRFWHGKDYCNFVFKDWVQLDKPFDDFIDRYTTPR 623
                                   :.|..|..::|.||||.||:.|||:.|:.||.|.|||.||||
  Fly   886 HEVNLNMASGGQEVAITTSSTQILSEFCGQAKYWFGKDYSNFILKDWMNLNSPFVDIIDRTTTPR 950

Zfish   624 MPWHDISSVVHGKAARDVARHFIQRWNFTKIMKPKYRSLSYPFLLPKS-HSTGNDLKYQVPDTVH 687
            |||||:...|.|.:|||||||||||||..|:.|.: .:..:|:|:||| |....:...|......
  Fly   951 MPWHDVGLCVVGTSARDVARHFIQRWNAMKLEKLR-DNTRFPYLMPKSYHQVRLNPNIQQNRQQR 1014

Zfish   688 TKVQVLRSAADWSAGI---KYHEESIHNAYIQVIAKSKHFIYIENQFFISC--------ADNKHV 741
            ...|:|||.:.||.|.   ...|:|||:||||.|.|::|::||||||||:.        |.| :|
  Fly  1015 VTCQLLRSVSAWSCGFIEADLVEQSIHDAYIQTITKAQHYVYIENQFFITMQLGMGVPGAYN-NV 1078

Zfish   742 YNKIGDAIIERIIRAHKENKKFRVYVVTPLLPGFEGDITTGGGNALQAVMHFNYRTMNRGEYSII 806
            .|:||:.:.:||:|||||.|.|||||:.|||||||||:....|.|::|:.|:||.:::||..||:
  Fly  1079 RNQIGETLFKRIVRAHKERKPFRVYVIMPLLPGFEGDVGGSTGIAVRAITHWNYASISRGRTSIL 1143

Zfish   807 SQLKKEMDDQWMNYISICGLRTHAELEGRLVTELIYVHSKLLIADDNTVIIGSANINDRSMLGKK 871
            ::|::.......||||...||.|:.|....:|||||||||||||||..||.||||||||||:||:
  Fly  1144 TRLQEAGIANPENYISFHSLRNHSFLNNTPITELIYVHSKLLIADDRVVICGSANINDRSMIGKR 1208

Zfish   872 DSEVAVIFEDSETTPSVMDGQEYQAGKFALQLRLECFKTILGAF-----TDPSIDVSDPISNSFY 931
            |||:|.|..|.|.....|:|::|.:|.||.:||...||..||..     :...:|::||:...|:
  Fly  1209 DSEIAAILMDEEFEDGRMNGKKYPSGVFAGRLRKYLFKEHLGLLESEGSSRSDLDINDPVCEKFW 1273

Zfish   932 KDVWMSVSGRNVTIYEKVFRCLPSSLVRNKQELLSFQSKTGLDKEDPLKAQELLKKIRGFLVQFP 996
            ...|..:|.:|..||::||:|:|:..|:....|..:|.:..|.|..|..|......|:|:||..|
  Fly  1274 HGTWRRISMQNTEIYDEVFKCIPTDFVKTFASLRKYQEEPPLAKTAPDLAANRANDIQGYLVDLP 1338

Zfish   997 LDFLCEENLMPSVGTKEHMVPTEIWT 1022
            |:||.:|.|.|...:||.::||.:||
  Fly  1339 LEFLNKEVLTPPGTSKEGLIPTSVWT 1364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pld1aNP_001153567.1 PLN02866 60..1007 CDD:215467 422/1133 (37%)
PX_domain 60..204 CDD:295365 55/211 (26%)
PH_PLD 192..321 CDD:269956 46/145 (32%)
PLDc_SF 347..497 CDD:301585 103/149 (69%)
PLDc_SF 702..883 CDD:301585 102/191 (53%)
PldNP_001137610.1 PX_PLD 230..431 CDD:132805 55/212 (26%)
PH_PLD 419..564 CDD:269956 46/145 (32%)
PLDc_vPLD1_2_yPLD_like_1 590..734 CDD:197236 100/144 (69%)
PLDc_vPLD1_2_yPLD_like_2 1032..1220 CDD:197239 101/188 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587182
Domainoid 1 1.000 187 1.000 Domainoid score I3265
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 751 1.000 Inparanoid score I547
OMA 1 1.010 - - QHG58673
OrthoDB 1 1.010 - - D330134at33208
OrthoFinder 1 1.000 - - FOG0001475
OrthoInspector 1 1.000 - - otm24539
orthoMCL 1 0.900 - - OOG6_100567
Panther 1 1.100 - - LDO PTHR18896
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2299
SonicParanoid 1 1.000 - - X1041
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

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