DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHD7 and hrp3

DIOPT Version :10

Sequence 1:XP_011515855.1 Gene:CHD7 / 55636 HGNCID:20626 Length:3027 Species:Homo sapiens
Sequence 2:NP_001342861.1 Gene:hrp3 / 2543064 PomBaseID:SPAC3G6.01 Length:1388 Species:Schizosaccharomyces pombe


Alignment Length:1496 Identity:421/1496 - (28%)
Similarity:651/1496 - (43%) Gaps:319/1496 - (21%)


- Green bases have known domain annotations that are detailed below.


Human   647 SKA--KKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPK----PKSSKKSSNK---- 701
            |||  :.|..:.:.|..|:|..|  :|....:..:.|.:..:...|:    .:|.:..||.    
pombe    13 SKAIEQLDHVQTETPNLKQEMSE--SPSNSGVASKRKLQSTEWLDPELYGLRRSGRTRSNPGRYV 75

Human   702 KPDSEASALKKKVNKGKTEGSENS------DLDKTPPPSPPPEEDEDP----GVQKRR------- 749
            ..|.:......|..||...||..|      |||.........|.:.|.    |..|:|       
pombe    76 DTDDQEDVFPSKHRKGTRNGSSFSRHRTIRDLDDEAESVTSEESESDDSSYGGTPKKRSRQKKSN 140

Human   750 ---------SSRQVKRKRYTEDLEFKISDEEADDA--DAAGRDSPSNTSQSEQQESVDAEGPVVE 803
                     |||..|...|.||..|:..:||.::.  :.|       |..||:.|...|    ::
pombe   141 TYVQDEIRFSSRNSKGVNYNEDAYFESFEEEEEEEMYEYA-------TEVSEEPEDTRA----ID 194

Human   804 KIMSSRSVKKQKESGEEVEIEEFYVKYKNFSYLHCQWASIEDL-------EKDKRIQQ------K 855
            .::..|.::.. :.....|..||.:|:.|||:|||.|....::       :.|..|:|      :
pombe   195 VVLDHRLIEGH-DGSTPSEDYEFLIKWVNFSHLHCTWEPYNNISMIRGSKKVDNHIKQVILLDRE 258

Human   856 IKRFKAKQGQNKFLSEIEDELFNPDYVE---VDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDST 917
            |:.......::....:||.|....:|.|   ||||:  |:..:..|.  ..|||||..|.|:..|
pombe   259 IREDPTTTREDIEAMDIEKERKRENYEEYKQVDRIV--AKHLNSDGS--VEYLVKWKQLLYDFCT 319

Human   918 WERRQDIDQAKIEEFEKLMSREPETERVER-----PPADDWKKSESSREYKNNNKLREYQLEGVN 977
            ||....|:.....|.:....||.......|     .....::|.|....|....:||::||.|||
pombe   320 WEASSIIEPIAATEIQAFQEREESALSPSRGTNYGNSRPKYRKLEQQPSYITGGELRDFQLTGVN 384

Human   978 WLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLSTIPNWEREFRTW-TE 1040
            |:.:.|:...|.|||||||||||:|::.|| |..:....||||||:.||||:|.|:.....| ::
pombe   385 WMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLALWASD 449

Human  1041 LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVID 1105
            :|.:.|.|:..||:.|:.||.|....|      ..||:.::||:|.:|.|...|.||.|:.:.||
pombe   450 MNCISYLGNTTSRQVIRDYEFYVDGTQ------KIKFNLLLTTYEYVLKDRSVLSNIKWQYMAID 508

Human  1106 EAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLK 1170
            |||||||....|.|.|......:::|:|||||||.:.||.:|:.||.|.:|........|..|.:
pombe   509 EAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEE 573

Human  1171 TEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQ 1235
            .|..::.||..|:|.:|||||:||||:|..|.|.|:.|||:::|..:|:.||.:|:..|::....
pombe   574 QEAYIRSLQEHLQPYILRRLKKDVEKSLPSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISS 638

Human  1236 ANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAES-PDFQLQAMIQAAGKLVLIDKLL 1299
            .:..:|||.::||:|..|||||.:|.||..:::.    |::. .|..|:.:|..:||:||:||||
pombe   639 GSQISLLNIVVELKKASNHPYLFDGVEESWMQKI----NSQGRRDEVLKGLIMNSGKMVLLDKLL 699

Human  1300 PKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 1364
            .:|:..||||||||||||.||||.|||..|.||::|:||.|...:|:.:||.|:.|:|..|||||
pombe   700 SRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLL 764

Human  1365 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKAS 1429
            .||||||||||..|||.||||||||||.||||.||.|||||...|.:|||:::::.|.::.::|.
pombe   765 STRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERAR 829

Human  1430 LKLGLDKAV--LQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILL 1492
            .|:.|:.|:  |.....::|:.|  .:.|.:|:..:|:.|| ..:...|:...|..:.::|:||.
pombe   830 RKMILEYAIISLGVTDKQKNSKN--DKFSAEELSAILKFGA-SNMFKAENNQKKLEDMNLDEILE 891

Human  1493 RRTHTITIESEG----KGSTFAKASFVASGNRTDISLDD-------PNF-------WQKWAKKAE 1539
            ......|....|    .|..|.| .|..:..:.|:|.||       ..|       .::.|.|.|
pombe   892 HAEDHDTSNDVGGASMGGEEFLK-QFEVTDYKADVSWDDIIPLTEREKFEEEDRLREEEEALKQE 955

Human  1540 LDIDALNGRN---NLVIDTPRVRKQTRLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGY 1601
            :::.:..|..   :..:::|.       ||...|                  .|.::...|.:..
pombe   956 IELSSRRGNRPYPSSAVESPS-------YSGTSE------------------RKSKKQMLKDEVL 995

Human  1602 ARSECFRVEKNLLVYG--WGRWTDILSHGRYKRQLTEQDVETICRTILVYCLNHYKGDENIKSFI 1664
            ...|...:.:.::.||  ..|:.||:.:.    .||.||...                  ||...
pombe   996 LEKEIRLLYRAMIRYGSLEHRYNDIVKYA----DLTTQDAHV------------------IKKIA 1038

Human  1665 WDLITPTADGQTRALVNHSGLSAPVPRGRKGKKVKAQSTQPVVQDADWLASCNPDALFQEDSYKK 1729
            .||:|                                :::..|..|:                  
pombe  1039 ADLVT--------------------------------ASRKAVSAAE------------------ 1053

Human  1730 HLKHHCNNSGNNATDQLYVL------ASCDLEQVIQPLEDSLSWVLLRVRMLYYLRQEVIGDQAD 1788
              |...|:..||.:.:..:|      .:.:.|.::|.|.|        :.:||           |
pombe  1054 --KDLSNDQSNNKSSRKALLITFKGVKNINAETLVQRLND--------LDILY-----------D 1097

Human  1789 KILEGADSSEADVWIPEPFHAEVPADW---WDKEADKSLLIGVFKHGYEKYNSMRADPALCFLER 1850
            .:.....|:     ...|.|......|   |....|..||.|:.|||:..:..:|.||.|...::
pombe  1098 AMPTSGYSN-----FQIPMHVRSVHGWSCQWGPREDSMLLSGICKHGFGAWLEIRDDPELKMKDK 1157

Human  1851 VGMPDAKAIAAEQRGTDMLADGGDGGEFDREDEDPEYKPTRTP---------------FKDEIDE 1900
            :.:.|.|.       ||           :...:|.|.|..:.|               .::....
pombe  1158 IFLEDTKQ-------TD-----------NSVPKDKENKEKKVPSAVHLVRRGEYLLSALREHHQN 1204

Human  1901 F---------ANSPSEDKEESMEIHATGKHSESNAELGQLYWPNTSTLTTRLRRLITAYQRSYKR 1956
            |         .|..::.|:::.....:||.:..:|:          .:.:..|....|...|.|:
pombe  1205 FGIKSSPAISTNGKTQPKKQTANRRQSGKPNVKSAQ----------KIESATRTPSPAISESRKK 1259

Human  1957 QQMRQEALMKTDRRRRR-----PREEVR-----ALEAEREAIISE------KRQKWTRREEADFY 2005
            ...:...:....|.:.|     |.:..:     :|.||::|...|      |..|..|::.:...
pombe  1260 PSSKDTKIETPSREQSRSQTASPVKSEKDDGNVSLNAEQKARCKELMYPVRKHMKRLRKDSSGLG 1324

Human  2006 R 2006
            |
pombe  1325 R 1325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHD7XP_011515855.1 Atrophin-1 197..>578 CDD:460830
CD1_tandem_CHD5-9_like 796..861 CDD:349315 17/77 (22%)
CD2_tandem_CHD5-9_like 879..936 CDD:349310 20/59 (34%)
PLN03142 967..>1566 CDD:215601 251/624 (40%)
BRK 2593..2634 CDD:462196
BRK 2672..2716 CDD:197800
hrp3NP_001342861.1 CD1_tandem_CHD1_yeast_like 189..250 CDD:349312 14/65 (22%)
CD2_tandem 286..339 CDD:349306 19/56 (34%)
PLN03142 339..>895 CDD:215601 241/568 (42%)
Cdh1_DBD_1 997..1081 CDD:408024 22/157 (14%)
DUF4208 1300..1384 CDD:464035 6/26 (23%)
Blue background indicates that the domain is not in the aligned region.

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