DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHD7 and chd-7

DIOPT Version :10

Sequence 1:XP_011515855.1 Gene:CHD7 / 55636 HGNCID:20626 Length:3027 Species:Homo sapiens
Sequence 2:NP_491426.2 Gene:chd-7 / 172079 WormBaseID:WBGene00007053 Length:2967 Species:Caenorhabditis elegans


Alignment Length:3445 Identity:986/3445 - (28%)
Similarity:1447/3445 - (42%) Gaps:965/3445 - (28%)


- Green bases have known domain annotations that are detailed below.


Human     1 MADPGMMSLFGEDGNIFSEGLEGLGECGYPENPVNPMGQQMPIDQGFASLQPSLHHPSTNQNQTK 65
            |||..||.  |.......:..:|:.: .||..|:||..||..            ||......|  
 Worm    14 MADYTMMG--GPPPQQSQQSQQGVPQ-RYPGQPMNPYEQQQQ------------HHQMMMMQQ-- 61

Human    66 LTHFDHYNQYEQQKMHLMDQPNRM----------------------------------------- 89
                      :.|..|:...|.::                                         
 Worm    62 ----------QHQMQHMAPPPQQVPPQPAQPPPAKKARGKSKKAQAEAAAAAAAAAAAQMDPMAS 116

Human    90 ---MSNTP---GNGLASPHSQYHTPPVPQVPHGGSGGGQMGVYPGMQNE---RHGQSFVDSSSMW 145
               |||.|   ..|..:..:.|...|.|..| ..:|..|.|..||....   ..||.        
 Worm   117 MAAMSNNPMMRQGGYPNQMAMYGGVPPPHYP-SSNGPSQQGYRPGPVTNGPPPQGQY-------- 172

Human   146 GPRAVQVPDQIRAPYQQQQPQPQ--------------------------PPQP------AP-SGP 177
             |...|.|...:..|.||:.|.|                          ||.|      || :||
 Worm   173 -PPPPQAPQNYQQMYHQQRAQQQQAGQQQAQGPPGYGPYGYAPQASTGYPPPPSQQSPYAPQAGP 236

Human   178 PAQ---GHPQHMQQMG------SYMARG-----DFSMQQHGQP-----QQRMSQFSQ-GQEGLNQ 222
            |.|   .:|.|.||..      .|...|     ....||.|.|     ..:|:|..| |:.|.|.
 Worm   237 PPQMRHQYPPHSQQQAPPGYWDGYQGYGGPPPSQQQQQQGGGPVTAPQSMQMAQQEQWGRVGTND 301

Human   223 GNPFIA---TSGPGHLSHVPQ--------QSPSMAPSLRHSVQQF---HHHPSTALH-------- 265
            ....||   .|.....:.:.|        .:.:....|:|.:.||   |:..|..|.        
 Worm   302 LMNVIAQVEKSSAECKARIQQLYNMQRSASADAEVQQLQHKLAQFQSDHYRYSQQLQHVQWQQQQ 366

Human   266 ------GESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTVPS-----PT-INNSGQ--------- 309
                  ..:.|.:...|.....||...|.    ||:|..:||     |. :|..|.         
 Worm   367 QQQQAAAAAAAAAAAASAGGHHQGPPPPT----SSQSNQIPSNPNSVPVHVNQPGSQVHITADKT 427

Human   310 ---YSRY--PYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAV-----------------G 352
               .|.|  .|.....| .::|...:::.....||..|..| .|||.                 |
 Worm   428 RTLISVYHDGYGGAGSG-ASSTESKESIVPPEPTPSMQESP-VPNAPQVKMEPEKPSPYQQQYNG 490

Human   353 FPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGS 417
            ..:.||.....||..||..:..|.. |..|....|                |.:|.|..|.:|..
 Worm   491 MENGSGNPYAQQQQQHPMYAQYQQQ-QQQHAQHQQ----------------NMSGYPQQQQQPQH 538

Human   418 AGIPMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPF---IGMSSAPRELTGHMRPNG 479
            .....:..|.|...|||   |.|     .|....|...||..|.   ||:|:||    ..|.|: 
 Worm   539 PHQHQQPASVPMQHHPQ---QHP-----SQHQTQPNQQQQQHPSGYGIGVSTAP----ASMEPS- 590

Human   480 CPGVGLGDPQAIQERLIPGQ-------------QHPGQQPSFQQLPT---------CPPLQPHPG 522
                     |::.:...|.|             |.....|.|...|:         .|...|.|.
 Worm   591 ---------QSVDQSAPPSQAQIPATSTPSTSSQQQNAYPEFPDFPSSSGYQEPTVAPEAIPSPS 646

Human   523 LHHQSSPPHPHHQPWAQLHPSPQNTPQKVPVHQHSPSEPFLEKPVP--DMTQVSGPNAQLVKSDD 585
            :.....|....:....|.....|...:.||     ..||.:|:..|  :.:|.:.|         
 Worm   647 VSDPIMPQSSQNDQELQAISDQQEILEDVP-----KEEPIIEEDEPKYEYSQETIP--------- 697

Human   586 YLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQE------LNRNSLDGSQE---EK 641
             :..::.:.:.|:.::..::::.:|.    |.|:|   |.|:|      .|...||..::   |.
 Worm   698 -VEELKDEVEFKEDQQSTSNLLEDDT----GIDNF---VKNEEGAEAGYSNGTPLDQVEQNDYEN 754

Human   642 KKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIP--KEPKEKKAKTATPKPKSSKKSS----- 699
            .:|:..:...|| ||.|.:.::||.:.:....|.:.  :||.|:.|:....:|:....||     
 Worm   755 IEKEEPQVSVDP-EPVEVEAQQEPADTEEYPIPSVGTIEEPAEEPAEEPVEEPEPMDDSSPVDQS 818

Human   700 ------------------------NKKPDSEASALKKKVNKGKTEGSENS-----DLDKTP---- 731
                                    ..:.|.|||:.|...:..|.|..:::     |:.:.|    
 Worm   819 TPVKADDIENFAGVEETFGEEEEVQDEDDDEASSAKSSKDDIKEEEDDDTSTITKDMSEAPSETN 883

Human   732 ----PPSPPPEEDEDPGVQKRRSSR-------QVKRKRYTEDLEFKISDEE-------------- 771
                .||.|..........|::|.|       :.::|:..:|     ||::              
 Worm   884 DGFTEPSTPATPLMGATSSKKKSYRRPAVVVAKSRKKKSVDD-----SDDDDFYPQRGRGKKKGG 943

Human   772 -----ADDADAAG-RDSPSNTSQSEQQESVDAEGP-----VVEKIMSSR---------------- 809
                 ||..|.|| ..:.|:....|....:|...|     |||||::.|                
 Worm   944 GGKKKADPTDEAGVEGAKSDDEDDEFLMKIDTPAPDPNAMVVEKILNMRMGKVEKKVPETEVAEG 1008

Human   810 -----------SVKKQ-KESG-----------------------EEVEIEEFYVKYKNFSYLHCQ 839
                       .|||: ||:|                       ||.|:|:|.:|:|..||:||:
 Worm  1009 SEENGEEKSEEKVKKEPKENGENGESVGNGESSKSKTESETNEIEEEEVEQFLIKWKGRSYVHCE 1073

Human   840 W-ASIEDLEKDKRIQQKIKRFKAKQGQNKFLSEIE-DELFNPDYVEVDRIMDFARSTDDRGEPVT 902
            | .:.|.||.|||::.||||||.|    |..|.|| ||.||.|:|.|||::|..  |:|.|:...
 Worm  1074 WKTAAELLEIDKRVEAKIKRFKVK----KMSSYIEDDEDFNSDFVIVDRVVDLI--TEDDGQEFV 1132

Human   903 HYLVKWCSLPYEDSTWE--------------RRQDIDQAKIEEFEKLMSREPETERVERPPADDW 953
              |:||.||.||:.|||              .||.||.|||.|             .:||..::|
 Worm  1133 --LIKWKSLGYEEVTWEPIEMIPADKVELWRERQVIDPAKIRE-------------KQRPEPEEW 1182

Human   954 KKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGP 1018
            ||..:|:.:||.|.|||||.|||:|||:.:||.:|||||||||||||:|:||||..||..|||||
 Worm  1183 KKMSTSKVWKNGNSLREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLSRIYDYGIHGP 1247

Human  1019 FLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYF-------KDPQGRVIKGSYK 1076
            |||:.|||||.||.|||.|||::|.:|||||..:|..:|.||:::       |:.:    |...|
 Worm  1248 FLVVVPLSTIQNWVREFETWTDMNAIVYHGSAYAREVLQQYEVFYDKRHCGAKNWK----KNFVK 1308

Human  1077 FHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLL-EGLKMMDLEHKVLLTGTPLQNT 1140
            ..|:|||||.:::|...|:.||||..|||||||||||||||| .||....:||:||||||||||.
 Worm  1309 IDALITTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRVLLTGTPLQNN 1373

Human  1141 VEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETI 1205
            ::||||||:||.|.:|.:..||:::||..:|::||||||.||||||||||||||||:|.||||||
 Worm  1374 IDELFSLLNFLHPQQFDNSATFLEQFGSCQTDDQVQKLQEILKPMMLRRLKEDVEKSLGPKEETI 1438

Human  1206 IEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFK 1270
            |||:|:::|||:||||||:||:.|.||   .:.|:|:|.|||||||||||:|||||||.|:.:|:
 Worm  1439 IEVQLSDMQKKFYRAILERNFSHLCKG---TSAPSLMNVMMELRKCCNHPFLINGAEEAIMNDFR 1500

Human  1271 ETHNAESPDFQLQ-----AMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRR 1330
            ..|    ||:..:     |:|||:||:|||:||||||:..||:||||||||:.||:||::||...
 Worm  1501 LAH----PDWDEETLAHKALIQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMS 1561

Human  1331 YPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQ 1395
            ||:|||||.|||:|||||||||||.:||||||||||||||||||||||||.||||||||||||||
 Worm  1562 YPFERIDGNVRGDLRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQ 1626

Human  1396 AQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEI 1460
            ||||||||||.|.||:|||||.|:||||||||||||||||||||||.:..:  ..|. .||||::
 Worm  1627 AQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALK--AEGT-ALSKKDV 1688

Human  1461 EDLLRKGAYGALMDEEDEGSKFCEEDIDQILLRRTHTITIESEGKGSTFAKASFVASGNR-TDIS 1524
            |:||:|||||::||||:|.|||.||||:.||.|||.|||:|:..|||.||||:|.:|.|: .||.
 Worm  1689 EELLKKGAYGSIMDEENESSKFNEEDIETILQRRTQTITLEAGQKGSLFAKATFNSSHNKGDDID 1753

Human  1525 LDDPNFWQKWAKKAELDIDAL----NGRNNLVIDTPRVRKQTRLYSAVKEDELMEFSDLESDSEE 1585
            :|||.||.|||:||::|::..    :|| .|:|:.|  ||:|:.:...|::...:.|: ||.:.:
 Worm  1754 IDDPEFWTKWAEKAQVDVEKATATPDGR-ELIIEEP--RKRTKRFEENKDEGDSDGSE-ESGNRK 1814

Human  1586 KPCA---KPRRPQDKSQGY-----------ARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTE 1636
            :..|   |.||..|:...|           :::|.|:|||.|..||||||.:|..:|  :.:::|
 Worm  1815 RGAAEKRKRRRGNDEDGDYSGSYRPDELATSKAEYFKVEKVLAQYGWGRWAEIKKYG--ELEISE 1877

Human  1637 QDVETICRTILVYCLNHYKGDENIKSFIWDLITPTADGQTRALVNHSGLSAPVPRGRKGKKVKAQ 1701
            ||:|.:.||:|::|:..::||:.|:.|:::||.|            .|:       ::.:|:.|.
 Worm  1878 QDIEHMSRTLLLHCIREFRGDDRIRQFVFNLIRP------------QGI-------QENQKLGAG 1923

Human  1702 STQPVVQDADW--LASCNPDALFQEDSYKKHLKHHCNNSGNNATDQLYVLASCDLEQVIQPLEDS 1764
            |    :.:..|  |...||.:...:.::::|:..|.|.                           
 Worm  1924 S----MYNQGWAGLPEFNPPSFALDSAFQRHVHRHANK--------------------------- 1957

Human  1765 LSWVLLRVRMLYYLRQEVIGDQADKILEGADSSEADVWIPE-PFHAEVPADWWDKEADKSLLIGV 1828
               :::::.||.:|...:|||:. .::|..:....|:.:|| |..:|...:.||.:.||..|||.
 Worm  1958 ---LMVKIDMLKHLEIHLIGDER-ALVEDFNVKWTDIKLPEMPTISETFIEGWDSDCDKCFLIGC 2018

Human  1829 FKHGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRGTDMLADGGDGGEFDREDEDPEYKPTRTP 1893
            ::||.:.::::|.|..|||.|       |.:|.                                
 Worm  2019 WRHGLDNFDAIRVDENLCFAE-------KNLAV-------------------------------- 2044

Human  1894 FKDEIDEFANSPSEDKEESMEIHATGKHSESNAELGQLYWPNTSTLTTRLRRLITAYQRSYKRQQ 1958
                                                   ||..:....|.|||:|:.|:|.    
 Worm  2045 ---------------------------------------WPGQTDFWLRFRRLLTSSQKSV---- 2066

Human  1959 MRQEALMKTDRRRRRPREEVRALEAEREAIISEKRQKWTRREEADFYRVVSTFGVIFDPVKQQF- 2022
                                      .:.:.:  :..||:|||.:|.|||.::|     ||... 
 Worm  2067 --------------------------HDPVYN--KLNWTKREEQEFIRVVRSYG-----VKTNIG 2098

Human  2023 -----DWNQFRAFAR-LDKKSDESLEKYFSCFVAMCRRVCRMPVKPDDEPPDL--SSIIEPITEE 2079
                 ||..|:..:. |:||:||...:...|.:|||:|.   ....|.:|.||  :..|:|:...
 Worm  2099 EGGNEDWTIFKTLSPILEKKTDEDCHEQLMCVLAMCQRA---QGSNDLKPIDLKRAMSIDPMPTR 2160

Human  2080 RASRTLYRIELLRKIREQVLHHPQLGERLKLCQPSLDLPEWWECGRHDRDLLVGAAKHGVSRTDY 2144
            :|.:.:.||.|:||:...|....:|  .|:||: :..:|..| |.:||::|:....:.|:.:...
 Worm  2161 KAIKMMNRISLMRKVHTMVQTLSEL--NLELCE-TTGMPSGW-CMQHDKELMEICDQCGLDQLAA 2221

Human  2145 HILNDPELS-------------FLDAHKNFAQNR--GAGNTSSLNPLAVGFVQTPPVISSAHIQD 2194
            ::||.|..:             .|:........:  |..:..::|.......:....:::|..|.
 Worm  2222 NVLNKPAFTKIVRPSETTLLRRLLEIVATIESGKWCGVADVETVNDSDSEDKKDMAAVAAAQAQF 2286

Human  2195 ERVLEQAEGKVEE---PENPAAKEKCEGKEEEEETDGSGKESKQECEAEASSVKNELKGV----- 2251
            .|:.:|.:.:.:.   ..:.:|..|...|....:.|...:..:|....:..|...|...:     
 Worm  2287 LRLQQQQQQQQQAAAVAASSSASRKASRKRPNNDNDAKMRAMQQMLMGQGGSGAAEYASMIALML 2351

Human  2252 --EVGADTGSKSISE--------------KGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDE 2300
              ::.|.:|.::::.              .|:.:.:::......|...|||..|.|       ::
 Worm  2352 MPQMMAASGGQNMTAAQQQALNQMLTMLIAGAVQQQQQAQPSTSKGASSSQSSAQA-------NQ 2409

Human  2301 ESNASMSTARDETRDGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVN 2365
            .:.|..:..               ::||:....:.:.|  ..|...:.:...:.||:|  ...:|
 Worm  2410 AAQAQAAAV---------------ALAQVAAAASASTS--SADAQAVAQQQQVLEALL--AMSMN 2455

Human  2366 RRQMFDFQGLIPGYTPTTVDSPLQKRSFAELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQR 2430
            ...:....|.......:|..:|.:.:...:......|        |.:...:...|..|:..:|:
 Worm  2456 PAALAALTGTSSSTGTSTPSAPKKSKPAPQKESTSSA--------TAAAAAASAQAAALAAAQQQ 2512

Human  2431 RRRRRKIEIEAERAAKRRNLME-MVAQLRESQVVSENGQEKVVDLSKASREATSSTSNFSSLSSK 2494
            :::.::.:..|::|...:...| ::.:|.|...|   |.:::..|:..|::|.            
 Worm  2513 QQQAQQAQQAAQQAQSAKTQEELLILRLLELAGV---GMQELAKLNTMSKDAR------------ 2562

Human  2495 FILPNV------STPVSDAFKTQMELLQAGLSRTPTRHLL---------------------NGSL 2532
              :|.:      |.|||              .|.|.|.|.                     ||: 
 Worm  2563 --VPMIHKQTRESLPVS--------------KRPPIRDLTVFVMSNPEWSIDIPLFNEMSGNGT- 2610

Human  2533 VDGEPPMKRRRGRRKNVEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPDT 2597
            ..|..|..:....|.......|...:.|.::...|.:..|.:..|......|.||.....|..|.
 Worm  2611 GSGAAPSSKAASSRPTPAATPLAVATPKPSTPKVEKSSATPSAPETPSASATCNIKIGESLQFDD 2675

Human  2598 RIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRN 2662
            .|.|.|.:.|..|.....||..:|..||..:|.|.|...|       .||:..            
 Worm  2676 MISVFNRKTGELLAASKWPKATELSAWLDANPDYNVHANS-------ALFAHL------------ 2721

Human  2663 PNKLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPE 2727
                                    .:|||.:..:.|      ..|....:...|.....|.....
 Worm  2722 ------------------------SLGGAHSDRIGD------ATPAVTASVPSTPTPSTSASAAN 2756

Human  2728 SMFDRLLTGPVVRGEGASRRGRRPKSE-------IARAAAAAAAVASTSGINPLLVNSLFAGMDL 2785
            :....|.....|  :.|.:....|.|.       .|:||||.||.:....|....:..|...|.|
 Worm  2757 AQLMALALAQQV--QQAQQTPSTPTSSKSRSATAAAQAAAAQAAASQQDAITKQQLEMLQMQMML 2819

Human  2786 TSLQNLQNLQSLQLAGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLGGLLNNPL 2850
            ...|....|||:...|.     |:.|.:||...:..               .||..:..:   ..
 Worm  2820 QQYQQAAALQSMLYGGY-----GMPTTSTAASSSST---------------ANVASMAAM---AA 2861

Human  2851 SAATGNTTTASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSV-----GAATAP 2910
            :|...:|.|.|.|.....||                  .||.||::|.:.:.||     .||.|.
 Worm  2862 AAQAASTPTTSKQASASTST------------------PSTSAVASAQTPSTSVPSTSSQAAAAA 2908

Human  2911 AGLPSNPLAFNPFLLSTMA--PGLFYPSMFLPPGLGGLTLPGFPALAGLQNAVGSSEEKAADKAE 2973
            |...::....||.||:.:.  |.:....|...|.:       ..|||..|.. ...::.:|.|::
 Worm  2909 ASSANSGEDINPLLLTALMQNPAILQSMMLSDPSI-------LAALAAAQQQ-QQQQQPSAKKSK 2965

Human  2974  2973
             Worm  2966  2965

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHD7XP_011515855.1 Atrophin-1 197..>578 CDD:460830 102/478 (21%)
CD1_tandem_CHD5-9_like 796..861 CDD:349315 37/121 (31%)
CD2_tandem_CHD5-9_like 879..936 CDD:349310 27/70 (39%)
PLN03142 967..>1566 CDD:215601 393/616 (64%)
BRK 2593..2634 CDD:462196 14/40 (35%)
BRK 2672..2716 CDD:197800 5/43 (12%)
chd-7NP_491426.2 Atrophin-1 <387..>666 CDD:460830 70/323 (22%)
PRK12323 <582..732 CDD:481241 32/185 (17%)
CD1_tandem_CHD5-9_like 979..1095 CDD:349315 34/115 (30%)
CD2_tandem 1112..1162 CDD:349306 19/53 (36%)
PLN03142 1197..>1803 CDD:215601 394/622 (63%)
SANT 2073..2133 CDD:197842 21/64 (33%)
BRK 2672..2716 CDD:197800 15/50 (30%)

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