DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment STAB2 and YLR001C

DIOPT Version :9

Sequence 1:NP_060034.9 Gene:STAB2 / 55576 HGNCID:18629 Length:2551 Species:Homo sapiens
Sequence 2:NP_013101.1 Gene:YLR001C / 850687 SGDID:S000003991 Length:862 Species:Saccharomyces cerevisiae


Alignment Length:1057 Identity:201/1057 - (19%)
Similarity:309/1057 - (29%) Gaps:431/1057 - (40%)


- Green bases have known domain annotations that are detailed below.


Human   988 GDGFLCYGNAAVELSFLSEAAIFNRWINNASLQPT-----LSATSNLTVLVPSQQA----TEDMD 1043
            ||.|    ..:..:..|||...|:.::.  .:|.|     |:...|.|:..|...|    .:..|
Yeast    29 GDDF----PFSTVIDILSENVEFSTFLR--IIQKTGHVQYLNELQNFTLFAPINSAFIKGDQTTD 87

Human  1044 QDEKSFWLSQSNIPALIKYHMLLGTYRVADLQTLSSSDMLATSLQGNFLHLAKVDGNITIEGASI 1108
            |.|:.|.:..           .|...||..::.|.:...|........|.|.|.:.:..:...::
Yeast    88 QFEEHFHIED-----------FLIHDRVLQVRDLENGTYLEKRAAKAPLLLRKHERHCFVNEIAV 141

Human  1109 VDGD------NAATNGVIHIINKVLVPQRRLTGSLPNLLMRL-EQMPDYSIFRGYIIQYNLANAI 1166
            |:.|      ||:..|    ||.:|:.|.::.    .||::| |:..|..||..:|..::..||.
Yeast   142 VEPDLLPSFQNASLQG----INNLLLIQPQIN----ELLVQLDEETQDLKIFSDFISSFSNYNAY 198

Human  1167 EAADAYTVFAPNN-------NAIE-NYIREK-------KVLSLEEDVLRYHVVLEEKLLKNDLHN 1216
              .::.||..|.:       |.|| ||:.:|       ..:|..:.......:|:| |:.:|::.
Yeast   199 --TNSSTVLVPLDVNFRKFFNTIEINYLLDKYNKLGKSNTISQAKWAADRTSLLQE-LIIDDVYG 260

Human  1217 G-MHRETMLGFSYFLSFFLHND----QLYVNE---APINYTNVATDKGVIHGLGKVLEIQKNRCD 1273
            | :.:|.:|........|:.::    .:.||.   :||  :|...:.||:||... |:..:....
Yeast   261 GILPKELILENKNNRKLFMKSNSEGTSVSVNNSDYSPI--SNRIFEIGVVHGFSD-LDFLRTHIQ 322

Human  1274 NNDTTIIRGRCRTCSSELTCPFGTKSLGNEKRRCIYTSYFM--------GRR-TLFIGCQPKCVR 1329
            .:....:.|        |.|....|.|           ||.        ||: |:|:        
Yeast   323 FDAEKYLHG--------LNCSEFVKEL-----------YFRDLEKFIQNGRKITIFV-------- 360

Human  1330 TVITRECCAGFFGPQCQPCPGNAQNVCFGNGICLDGVNGTGVCECGEGFSGTACETCTEGKYGIH 1394
                         ||.                                                 
Yeast   361 -------------PQA------------------------------------------------- 363

Human  1395 CDQACSCVHGRCNQGPLGDGSCDCDVGWRGVHCDNATTEDNCNGTCHTSANCLTNSDGTASCKCA 1459
                                               :..||.                        
Yeast   364 -----------------------------------SFNEDR------------------------ 369

Human  1460 AGFQGNGTICTAINACEISNGGCSAKADCKRTTPGRRVCTCKAGYTGDGIVCLEINPCLENH--- 1521
                                                       |||         .|.|..|   
Yeast   370 -------------------------------------------GYT---------KPSLLYHFVE 382

Human  1522 GGCDKNAECTQTGPNQAACNCLPAYTGDGKVCTLINVCLTKNGGCSEFAICNH------TGQVER 1580
            |..|...:.:...|.|.|    |....|...|:...   ...|.|.:|.|...      .|:. :
Yeast   383 GKIDLEQDFSSLRPIQYA----PTQIYDSAFCSSAK---RLGGHCQKFKITRSNKGYYINGRF-K 439

Human  1581 TCTCKPNYIG--------DGFTCRGSIYQELPKNPKTSQYFFQLQEHFVKDLVGPG---PFTVFA 1634
            ....||..||        |.....|.:...|......|.....|:|..:.||  |.   .:|:..
Yeast   440 ILNTKPYEIGNTSIYSIDDDLQLPGDLVLSLAPENHCSISLMLLKELNLLDL--PSNHKGYTILL 502

Human  1635 PLSAAFDEEARVKDWDKYGLMPQVLRYHVVACHQLLLENL------------------KLISNAT 1681
            |.         :..||...|....||.:..|.: ||:.||                  .|..|:.
Yeast   503 PC---------MNSWDNNDLTIDYLRSNKTALN-LLMRNLIFEDLIYSNNYSISTTVKNLYGNSV 557

Human  1682 SLQGEPIVIS-----VSQSTVYINNKAKII---SSDIISTNGIVHIIDKLLSPKNLLITPKDNSG 1738
            |:..:.||.|     :|.||:    |..||   ||||....|::|.||:|..|.:|.|:      
Yeast   558 SIGVQKIVGSQNLTKISVSTI----KESIIIEESSDIFFNQGVIHPIDQLDFPVDLEIS------ 612

Human  1739 RILQNLTTLATNNGYIKFSNLIQDSGLLSVITDPIHTPVTLFWPTDQA----------------- 1786
              |:.|...........|.||..|  |.|:|.:  :...:|..||..:                 
Yeast   613 --LKELIETTGTKEIFDFFNLFYD--LSSIIWN--NEEYSLLVPTASSIPLSGITANSTNLRKFL 671

Human  1787 -LHALPAE----------------------QQDFLFN-----QDNKDKLKEYLKFHVIRDAK--- 1820
             ||.:||.                      ::|.|.|     |.:..|....||.....:.|   
Yeast   672 ELHLIPANVTQNLLDCNGSISTKLGTKLNCRKDHLDNVFVSIQGDWTKEVRVLKTGCTTNLKSSC 736

Human  1821 VLAVDLPTSTAWKTLQGSELSVKCGAGRDIGDLFLNGQTCRIVQRELLFDLGVAYGIDCLLI--- 1882
            :..:|.|.|.:|...:...|.:   .|..:|...:.|.|..|   .|||         |::|   
Yeast   737 IFLIDKPISLSWLNSEKYHLRL---PGIAVGFGVIIGVTIAI---SLLF---------CIIITRG 786

Human  1883 ----DPTLGGRCDTFTT 1895
                |....||.|..||
Yeast   787 GKVKDKNQRGRNDRATT 803

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
STAB2NP_060034.9 EGF_3 246..275 CDD:289699
EGF_3 326..361 CDD:289699
Fasciclin 382..505 CDD:280607
Fasciclin 526..654 CDD:280607
EGF_3 837..865 CDD:289699
EGF_3 920..951 CDD:289699
EGF_3 957..993 CDD:289699 3/4 (75%)
Fasciclin 1009..1129 CDD:280607 28/134 (21%)
Fasciclin 1148..1265 CDD:280607 33/139 (24%)
EGF_3 1437..1469 CDD:289699 0/31 (0%)
EGF_3 1475..1511 CDD:289699 3/35 (9%)
EGF_3 1517..1553 CDD:289699 9/38 (24%)
EGF_3 1559..1595 CDD:289699 10/49 (20%)
Fasciclin 1617..1726 CDD:280607 37/137 (27%)
Fasciclin 1752..1882 CDD:280607 36/177 (20%)
EGF_3 2086..2121 CDD:289699
EGF_3 2127..2164 CDD:289699
Link_domain_TSG_6_like 2198..2290 CDD:239592
FAS1 2356..2449 CDD:214719
Interaction with TMSB4X. /evidence=ECO:0000269|PubMed:18519035 2504..2514
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2512..2551
YLR001CNP_013101.1 Fasciclin <36..>86 CDD:413430 11/51 (22%)
Fasciclin 78..468 CDD:413430 100/622 (16%)
Fasciclin 493..603 CDD:413430 32/123 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1830
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.030

Return to query results.
Submit another query.