DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnf130 and rnf130

DIOPT Version :9

Sequence 1:XP_009289393.1 Gene:rnf130 / 553950 ZFINID:ZDB-GENE-050522-525 Length:428 Species:Danio rerio
Sequence 2:NP_001107712.1 Gene:rnf130 / 100124963 XenbaseID:XB-GENE-949564 Length:419 Species:Xenopus tropicalis


Alignment Length:407 Identity:273/407 - (67%)
Similarity:335/407 - (82%) Gaps:7/407 - (1%)


- Green bases have known domain annotations that are detailed below.


Zfish    13 SCLLALLLAFVSPRCSLSIGADKTMVNKEDYYSAIVNATVLDHKGNPQQMVTKNDGRYGQNSPKT 77
            :||..|:|   .|...:..|:|  ..|.|: |||:||.|:.|...|| .::..:.||||.:||||
 Frog    11 NCLPILVL---FPCSMVQSGSD--TANMEN-YSALVNVTIQDPSSNP-VLLRIDGGRYGLDSPKT 68

Zfish    78 EAKGIVVAPAAVNGAVDLQGCCPHTRFIVPPKTTHWVAIMQRGKCTFKEKILKAAAFNASAVIIY 142
            ||||:::.|..::||.|..||.|.|||.|||.|.||:|::|||.||||||||:||:.|||||:||
 Frog    69 EAKGLLLTPVHIHGAADRLGCDPQTRFNVPPNTKHWIALLQRGNCTFKEKILRAASHNASAVVIY 133

Zfish   143 NNNTKEDTVTMAHEGTGDIVAVMITESFGKEILGFLEKNQTVLVSVIVGSRGMPKNINRGSLVFV 207
            |||:||:||||.|:|||:|||:||:|:.|:|||.::|:|.:||:::.||||...||.:|||||||
 Frog   134 NNNSKEETVTMTHQGTGEIVAIMISEARGREILSYVERNISVLMAIAVGSRNQHKNFSRGSLVFV 198

Zfish   208 SISFIVLMIISSAWLIFYFIQKIRDTSARDRSQRRLGDAAKKAISKLTTRTVKRGDKETEPDFNH 272
            ||||||||||||||||||||||||.||||||:||||||||||||.||||||||:|||||:|||:|
 Frog   199 SISFIVLMIISSAWLIFYFIQKIRYTSARDRNQRRLGDAAKKAIGKLTTRTVKKGDKETDPDFDH 263

Zfish   273 CAVCIEGYQLNDVVRILPCKHVFHKMCVDPWLNEHCTCPMCKLNILKALGVMPNLPCVDNMAFDM 337
            ||||||.|:.||:||:|||||||||:||||||:|||||||||||||||||:..|:||.||:||||
 Frog   264 CAVCIESYKQNDIVRVLPCKHVFHKVCVDPWLSEHCTCPMCKLNILKALGIAANVPCTDNVAFDM 328

Zfish   338 DRMSRSQTSSQRTALVDLSSETSISLEPLRHSSSSQLPSDEELIPRSGEINIAVTKEWFIVASFG 402
            :|::|||..|:|:|..|.:.|.|:|||.||.|..||.|.|.|.|||:|||||:|||||||:||||
 Frog   329 ERLTRSQPPSRRSAPNDPTEEGSLSLESLRSSRISQGPHDVEAIPRTGEINISVTKEWFIIASFG 393

Zfish   403 VLSALTLCYMIIRATAS 419
            :|||||||||||:||||
 Frog   394 LLSALTLCYMIIKATAS 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnf130XP_009289393.1 PA_GRAIL_like 49..188 CDD:239037 81/138 (59%)
zf-RING_2 271..314 CDD:290367 34/42 (81%)
rnf130NP_001107712.1 PA_GRAIL_like 41..179 CDD:239037 82/137 (60%)
HRD1 <197..344 CDD:227568 122/146 (84%)
RING_Ubox 262..310 CDD:388418 38/47 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 152 1.000 Domainoid score I17632
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H41267
Inparanoid 1 1.050 540 1.000 Inparanoid score I6004
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1487241at2759
OrthoFinder 1 1.000 - - FOG0000832
OrthoInspector 1 1.000 - - oto78845
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X295
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

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