DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TMCO6 and alphaKap4

DIOPT Version :10

Sequence 1:NP_001287909.1 Gene:TMCO6 / 55374 HGNCID:28814 Length:499 Species:Homo sapiens
Sequence 2:NP_648007.1 Gene:alphaKap4 / 38675 FlyBaseID:FBgn0035657 Length:442 Species:Drosophila melanogaster


Alignment Length:287 Identity:63/287 - (21%)
Similarity:126/287 - (43%) Gaps:33/287 - (11%)


- Green bases have known domain annotations that are detailed below.


Human   176 LIVESEAVRRQLLPQGIVPALAACIQSPHVA-VLEALGYALSQLLQAE--EAPEKIIPPASASSS 237
            |.:.:...:.:|....:||.:...::|..:. ::|:||:.....::|:  :|...|...:|..|:
  Fly    35 LTIYNALTKCKLTSSEVVPDVNKLLKSNTIGNLVESLGHGNKNKIRADAADALAHIASGSSEHSN 99

Human   238 IL--ASTLPQHMLQMLQ-PGPKLNPGVAVEFAWCLHYIICSQVSNPLLIGHGALSTLGLLLLDLA 299
            ::  |..:|: ::::|| |.|::.....:.....||:   :......:|.||.:..|..::.|.:
  Fly   100 LIAKAGAVPR-LIRLLQSPDPEVCEKGILSLGNLLHF---APNLRDYIIRHGLMQKLMSIIQDKS 160

Human   300 GAVQKTEDAGLELLACPVLRCLSNLLTEAAVETVGGQMQLRDE--RVVAALFILLQFFFQKQPSL 362
                          .|.::  ||::........:..|....|.  .::.||.|:|   :..:.::
  Fly   161 --------------TCTLM--LSHVTWVLRKLCISSQPSPPDNAAEIIQALNIVL---YNPEANV 206

Human   363 LPEGLWLLNNLTANSPSFCTSLLSLDLIEPLLQLLPVSNV-VSVMVLTVLCNVAEKGPAYCQRLW 426
            |.:.|..:.|| |:.......||..:::..::.||...|| |....|..|.|:|.......|.|.
  Fly   207 LEDALMAVRNL-AHGNETIQMLLDFEVVPRIIYLLEHPNVTVQNAALQALINIATGSEEQIQELL 270

Human   427 PGPLLPALLHTLAFSDTEVVGQSLELL 453
            ...|||.|...::.||.::..|.|:||
  Fly   271 NNNLLPHLSALMSNSDPDIRCQVLKLL 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TMCO6NP_001287909.1 SRP1 23..>399 CDD:227396 44/230 (19%)
armadillo repeat 104..135 CDD:293788
armadillo repeat 143..178 CDD:293788 1/1 (100%)
armadillo repeat 184..218 CDD:293788 7/34 (21%)
alphaKap4NP_648007.1 SRP1 45..432 CDD:227396 62/277 (22%)
armadillo repeat 98..134 CDD:293788 7/36 (19%)
armadillo repeat 140..176 CDD:293788 8/51 (16%)
armadillo repeat 192..217 CDD:293788 6/27 (22%)
armadillo repeat 224..260 CDD:293788 10/35 (29%)
armadillo repeat 266..300 CDD:293788 12/32 (38%)
armadillo repeat 308..342 CDD:293788
armadillo repeat 350..383 CDD:293788
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.