DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RHOT1 and rhot1

DIOPT Version :10

Sequence 1:XP_047292309.1 Gene:RHOT1 / 55288 HGNCID:21168 Length:722 Species:Homo sapiens
Sequence 2:XP_031750214.1 Gene:rhot1 / 100492251 XenbaseID:XB-GENE-494893 Length:707 Species:Xenopus tropicalis


Alignment Length:666 Identity:525/666 - (78%)
Similarity:580/666 - (87%) Gaps:45/666 - (6%)


- Green bases have known domain annotations that are detailed below.


Human    45 RVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVI 109
            ||||||||||||.||||||||.||||||||.|||||||||||||||||||:|:||:.|||:||||
 Frog    14 RVGKTSLIMSLVGEEFPEEVPARAEEITIPGDVTPERVPTHIVDYSEAEQTDDQLYMEISRANVI 78

Human   110 CIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLVEYSSMETILPIMNQYTEIET 174
            ||||||||::||||||:.||||||||||||:|:|||||||||||::|||:||||||||||:||||
 Frog    79 CIVYAVNNRNSIDKVTNHWIPLINERTDKDNRVPLILVGNKSDLLDYSSLETILPIMNQYSEIET 143

Human   175 CVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAE 239
            |||||||||||||||||||||||||||||||||||||:||||:|||||||||||.|||..|||||
 Frog   144 CVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKELKPACVKALTRIFKISDMDNDRILNDAE 208

Human   240 LNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFLFLHTLFIQRGRHETTWTVLRR 304
            |||||||||:.||||||||||||||||::.|||:.:|||||||||||||||||||||||||||||
 Frog   209 LNFFQRICFHIPLAPQALEDVKNVVRKNVLDGVSANGLTLKGFLFLHTLFIQRGRHETTWTVLRR 273

Human   305 FGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPY 369
            |||||||:||||||||.||:|.||||||||||||||||.|||||.||||||||:||||||:||||
 Frog   274 FGYDDDLELTPEYLFPQLKVPIDCTTELNHHAYLFLQSIFDKHDQDRDCALSPEELKDLFQVFPY 338

Human   370 IPWGPDVNNTVCTNERGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTR 434
            :||||||||||.|||:||||||||||||||||||||||||||||||||||||||||||.||||||
 Frog   339 MPWGPDVNNTVYTNEKGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQAMAVTVTR 403

Human   435 DKKIDLQKKQTQRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQE 499
            ||||||.|:|||||||||||||.:..||||:||:.|||||||||::||:|||:||||.|||||||
 Frog   404 DKKIDLHKRQTQRNVFRCNVIGSQGSGKSGILQSHLGRNLMRQKRVREEHKSFYAINPVYVYGQE 468

Human   500 KYLLLHDISESEFLTEAEIICDVVCLVYDVSNPKSFEYCARIFKQHFMDSRIPCLIVAAKSDLHE 564
            ||||||.|.|||.|:.|:.:||||||:|||:||.||:||||||||||||||.|||:|||||||||
 Frog   469 KYLLLHHIVESEALSPADTLCDVVCLLYDVANPHSFDYCARIFKQHFMDSRTPCLLVAAKSDLHE 533

Human   565 VKQEYSISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPEDHYRDRLSRDMGHTDRI 629
            ||||.||||.:||:|||||||||||||||::||::||:|:|||||||                  
 Frog   534 VKQESSISPAEFCKKHKMPPPQAFTCNTAESPSREIFIKMTTMAMYP------------------ 580

Human   630 ENLRKIWVFLKTAFHARLRCMCTCNRCTFCICQNFLNSDLLQSVKNKIFTAVLNRHVTQADLKSS 694
                          ||||||:|||||||||:|||.|||.||||||||:||..:||          
 Frog   581 --------------HARLRCLCTCNRCTFCLCQNLLNSHLLQSVKNKLFTGAINR---------- 621

Human   695 TFWLRASFGATVFAVL 710
               |||:..|...|:|
 Frog   622 ---LRAAIDALGDALL 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RHOT1XP_047292309.1 Miro1 46..200 CDD:206680 135/153 (88%)
EF_assoc_2 250..334 CDD:462444 72/83 (87%)
EF_assoc_1 372..441 CDD:462443 65/68 (96%)
Miro2 446..611 CDD:206679 128/164 (78%)
rhot1XP_031750214.1 Miro1 3..169 CDD:206680 136/154 (88%)
EF_assoc_2 220..303 CDD:462444 72/82 (88%)
EF_assoc_1 341..409 CDD:462443 64/67 (96%)
Miro2 415..581 CDD:206679 130/197 (66%)

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