DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSPC1 and nonA

DIOPT Version :10

Sequence 1:NP_001035879.1 Gene:PSPC1 / 55269 HGNCID:20320 Length:523 Species:Homo sapiens
Sequence 2:NP_727962.1 Gene:nonA / 32603 FlyBaseID:FBgn0004227 Length:742 Species:Drosophila melanogaster


Alignment Length:410 Identity:164/410 - (40%)
Similarity:238/410 - (58%) Gaps:24/410 - (5%)


- Green bases have known domain annotations that are detailed below.


Human    62 GFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES 126
            |.|.:::....|.|..::.|.||:||||..|||:::.:.:|:.|||.||:|.|.|:.|.|::::.
  Fly   282 GPTFELEPVEVPTETKFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDY 346

Human   127 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD 191
            ...||.||..|||::.|.|.||:|||.:...|.|.||:|.||||||.::|..|||:|:|.:.|||
  Fly   347 HPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVSNELLYKSFEIFGPIERASITVDD 411

Human   192 RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQY 255
            ||:..|:|.||||.|..|...|..|.:..|.||.:.||.:|:|||..||.||||||.. :|...:
  Fly   412 RGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLRPCLVDPMEVNDDTDGLPEKAFNKKMPDF 476

Human   256 HKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLM 320
            ::||...||||.|.:||.||.||||.|..:.|.:::.:.|.::..::||||:||.||:|.:..|:
  Fly   477 NQERSIGPRFADPNSFEHEYGSRWKQLHNLFKTKQDALKRELKMEEDKLEAQMEYARYEQETELL 541

Human   321 RQDLMRRQ--EELRRLE-ELRNQELQKRKQIQLRHEEEHRRREEEMIRH---REQEELRRQQEG- 378
            ||:|.:|:  .|.::|| |:|.::.::.::   |.||..||.:.||..|   :|::.||||||. 
  Fly   542 RQELRKREVDNERKKLEWEMREKQAEEMRK---REEETMRRHQTEMQSHMNRQEEDMLRRQQETL 603

Human   379 FKPNYMENREQEMRMGDMGPRGAINMG-DAFSPAPAGNQGPP-PMMGMNMNNRATIPGPPMGPGP 441
            |......|...:.:.|..|..|..|.. |.|    |||...| .:...|.||.:|:.|....|..
  Fly   604 FMKAQQLNSLLDQQEGFGGGGGGNNSTFDNF----AGNSNSPFEVFRGNNNNNSTMIGNNAAPNT 664

Human   442 AM-----GP--EGAANMGTP 454
            ..     ||  |..:|...|
  Fly   665 QEIKRLDGPINEITSNFSPP 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSPC1NP_001035879.1 RRM1_PSP1 81..151 CDD:409999 32/69 (46%)
Sufficient for paraspeckles localization. /evidence=ECO:0000269|PubMed:16148043 125..358 104/236 (44%)
RRM2_PSP1 157..236 CDD:410002 39/78 (50%)
NOPS_PSPC1 227..320 CDD:240584 42/93 (45%)
Sufficient for perinucleolar caps localization and interaction with NONO. /evidence=ECO:0000269|PubMed:16148043 231..358 53/130 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 460..523
nonANP_727962.1 RRM1_p54nrb_like 301..371 CDD:409769 32/69 (46%)
RRM2_p54nrb_like 377..456 CDD:409770 39/78 (50%)
NOPS_NONA_like 447..546 CDD:240580 45/98 (46%)
DUF5401 <499..>618 CDD:375164 42/121 (35%)
PTZ00121 <508..730 CDD:173412 59/184 (32%)
Blue background indicates that the domain is not in the aligned region.

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