DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LRRC1 and lrrc1

DIOPT Version :10

Sequence 1:NP_060684.4 Gene:LRRC1 / 55227 HGNCID:14307 Length:524 Species:Homo sapiens
Sequence 2:NP_001013463.2 Gene:lrrc1 / 541316 ZFINID:ZDB-GENE-050320-1 Length:526 Species:Danio rerio


Alignment Length:527 Identity:399/527 - (75%)
Similarity:475/527 - (90%) Gaps:4/527 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MFHCIPLWRCNRHVESIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLG 65
            |||||||||||||:|:||||||||::||:|||||..|||||||||||||:||:.||.|.||||||
Zfish     1 MFHCIPLWRCNRHIEAIDKRHCSLLFVPDEIYRYRGSLEELLLDANQLRDLPKPFFNLTKLRKLG 65

Human    66 LSDNEIQRLPPEIANFMQLVELDVSRNEIPEIPESISFCKALQVADFSGNPLTRLPESFPELQNL 130
            ||||||||||.:||||.||||||:|||:|.|:|||||:||.|||||||||||||||||||||:||
Zfish    66 LSDNEIQRLPGDIANFNQLVELDISRNDIMELPESISYCKTLQVADFSGNPLTRLPESFPELRNL 130

Human   131 TCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGA 195
            .|||:||||||:||:|||||.||.|||||||||||||:||:||::|||||:|:||:|||||:||.
Zfish   131 ACLSINDISLQALPDNIGNLCNLVSLELRENLLTYLPESLSQLQKLEELDVGSNELYNLPETIGC 195

Human   196 LLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLETIPD 260
            |:.||||||||||||::|.|:|::::|.|||||||:|||||||:..|.|||||::||||::.:|:
Zfish   196 LVSLKDLWLDGNQLSDIPAEVGSMRSLTCLDVSENKLERLPEEMGNLLSLTDLLVSQNLIDLLPE 260

Human   261 GIGKLKKLSILKVDQNRLTQLPEAVGECESLTELVLTENQLLTLPKSIGKLKKLSNLNADRNKLV 325
            ||||||:|||||.|||||.||||::|.||||||||||||||:.||:||||||||||.|.|||:|.
Zfish   261 GIGKLKRLSILKADQNRLVQLPESIGHCESLTELVLTENQLVNLPRSIGKLKKLSNFNCDRNRLA 325

Human   326 SLPKEIGGCCSLTVFCVRDNRLTRIPAEVSQATELHVLDVAGNRLLHLPLSLTALKLKALWLSDN 390
            ||||||||||||.|.|||:|||.|||.|:|||:||||||::|||||:|||:||:|:|||||||:|
Zfish   326 SLPKEIGGCCSLNVLCVRENRLMRIPPELSQASELHVLDLSGNRLLYLPLTLTSLRLKALWLSEN 390

Human   391 QSQPLLTFQTDTDYTTGEKILTCVLLPQLP--SEPTCQENLPRCGALENLV-NDVSDEAWNERAV 452
            |||||||||||.|..:|||:||||||||.|  ||.|..:||.||||||:|| :.:.|:.|:::|.
Zfish   391 QSQPLLTFQTDVDPESGEKVLTCVLLPQQPCESENTGSDNLARCGALESLVESSILDDTWDDKAA 455

Human   453 NRVSAIRFVEDEKDEEDNETRTLLRRATPHPGELKHMKKTVENLRNDMNAAKGLDSNKNEVNHAI 517
            ||:|.|||:||: |:||:|.|||||||||||||||:|||..|::|.||||||||||||||||:|:
Zfish   456 NRMSTIRFMEDD-DDEDDEERTLLRRATPHPGELKNMKKVAESIRKDMNAAKGLDSNKNEVNNAV 519

Human   518 DRVTTSV 524
            |||||||
Zfish   520 DRVTTSV 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LRRC1NP_060684.4 LRR 1 11..34 17/22 (77%)
PRK15370 <23..>125 CDD:185268 82/101 (81%)
LRR 2 35..58 17/22 (77%)
leucine-rich repeat 38..60 CDD:275380 17/21 (81%)
LRR 3 60..81 18/20 (90%)
leucine-rich repeat 61..83 CDD:275380 19/21 (90%)
LRR 4 83..105 16/21 (76%)
leucine-rich repeat 84..106 CDD:275380 16/21 (76%)
leucine-rich repeat 107..129 CDD:275380 21/21 (100%)
LRR 5 107..126 18/18 (100%)
LRR 6 127..149 16/21 (76%)
leucine-rich repeat 130..152 CDD:275380 17/21 (81%)
LRR 133..424 CDD:443914 220/292 (75%)
LRR 7 150..172 18/21 (86%)
leucine-rich repeat 153..175 CDD:275380 18/21 (86%)
LRR 8 173..196 16/22 (73%)
leucine-rich repeat 176..198 CDD:275380 16/21 (76%)
LRR 9 198..218 14/19 (74%)
leucine-rich repeat 199..221 CDD:275380 15/21 (71%)
LRR 10 219..242 15/22 (68%)
leucine-rich repeat 222..244 CDD:275380 16/21 (76%)
LRR 11 244..264 12/19 (63%)
leucine-rich repeat 245..267 CDD:275380 14/21 (67%)
LRR 12 265..288 17/22 (77%)
LRR 13 290..310 16/19 (84%)
leucine-rich repeat 291..313 CDD:275380 18/21 (86%)
LRR 14 311..334 18/22 (82%)
leucine-rich repeat 314..336 CDD:275380 17/21 (81%)
LRR 15 336..356 13/19 (68%)
LRR 16 357..380 17/22 (77%)
leucine-rich repeat 360..381 CDD:275380 15/20 (75%)
LRR 17 382..405 20/22 (91%)
lrrc1NP_001013463.2 None

Return to query results.
Submit another query.