DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SRBD1 and spt6

DIOPT Version :9

Sequence 1:NP_060549.4 Gene:SRBD1 / 55133 HGNCID:25521 Length:995 Species:Homo sapiens
Sequence 2:NP_594487.2 Gene:spt6 / 2541605 PomBaseID:SPAC1F7.01c Length:1365 Species:Schizosaccharomyces pombe


Alignment Length:1144 Identity:234/1144 - (20%)
Similarity:408/1144 - (35%) Gaps:341/1144 - (29%)


- Green bases have known domain annotations that are detailed below.


Human     5 PRRAKVQVQDVVLKDEFSSFSELSSASEEDDKEDSAWEPQKKVPRSRKQPPPKESKPKRMPRVKK 69
            |.|.:.....|:  |||:.|      .|:|:.||...:.:|     .:..||.||       |:.
pombe   158 PNRTQGHRAGVI--DEFADF------IEQDEFEDEERQEEK-----YETGPPIES-------VRP 202

Human    70 NAPQISDGSEVVVVK---EELNSSVAIADTALEDRKNKLDTVQTLKT----AKTKQKCAAQPHTV 127
            .|..|||...:.:.:   :..:.:.|:.|   ||.:::|:...:|||    ::.|.|...:...:
pombe   203 EALGISDDDYIQIYEVFGDGTDYAFALED---EDAEDELEESVSLKTIFEPSELKDKMLTEEDEI 264

Human   128 RRTKKLKVEEETSKAS-----NLEGESNSSETPSTSTVWGGTCKKEENDDDFTFGQSALKK---- 183
                 :::.:|..:..     |::                  |.::|..:...:....|.|    
pombe   265 -----IRITDEPERMQLYMKRNID------------------CSEDEFREQVAWIIDYLLKNRRD 306

Human   184 IKTETY-PQGQPVKFPAN---ANSTKEEVEMNWD-----MVQVLSERTNIEP-------W----V 228
            |..|.| |....|::..:   .:|.  ||...|.     :|....||..|.|       |    :
pombe   307 IDAELYEPFQTAVRYVVHFFIRDSL--EVPFIWQHRRDYIVHNNRERNTITPLLSQNDLWNIFFL 369

Human   229 CA----------NIIRLF-----NDDNTIPFIIRYRKELINNLDA-DSLRE-VQQTLEE------ 270
            |.          :|::|:     |||..:||.     |..::||| |.|.: :..|..|      
pombe   370 CTKFWSLHSKKQDILKLYSDLGINDDLVVPFC-----EAASSLDAIDDLNDYIHFTYSEQIRDRA 429

Human   271 ------LRAVAKKVHSTIQKIKKEGKMSECLLKAM-LNCKTFEELEHVSAPYKTGSKGTKAQRAR 328
                  ||......:|..:|.:|....:  |:|.. ::.|.|              ....||.||
pombe   430 LLMGTGLRRPQGSKYSFFEKFRKSSLYN--LVKEFGMSAKDF--------------SFNVAQGAR 478

Human   329 QLGLEGAARALLEKPGELSLLSYIRPDVKGLSTLQDIEIGVQHILADMIAKD----KDTLDFIRN 389
            ...:|....:    |.||| .:|:..:   ||:.:.:....:.:||:.|..|    |...|.:.|
pombe   479 LRFVEDNTLS----PEELS-RTYVTNE---LSSPEQVLQKARRVLAEEIIHDPQFRKSFRDKLYN 535

Human   390 LCQKRHVCIQSSLAKVSS-------KKVNEKDVDKF----LLYQHFSCNIRNIHHHQILAINRGE 443
            ......:..|..:.|:.|       |.:..|.:..|    :|:               |.:.:.|
pombe   536 AGVVTVLATQKGVRKIGSEHPYYEFKYLKRKPLGSFELEPILF---------------LKMLKAE 585

Human   444 NLKVLTVKVNISDG-----------VKDEFCRWCIQNRWRPRSFARPELMKILYNSLNDSFKRLI 497
            ...::.:.:...|.           |.|.|....:|  |.    |:.||:      |.:.|||. 
pombe   586 EEGLIQLSIEFEDPDDVFKGLLELFVSDNFSENAMQ--WN----AQRELV------LKEVFKRF- 637

Human   498 YPLLCREFRAKLTSDAEKESVMM-----FGRNLRQLLLT----------------SPVPGRTLMG 541
                     :.|..||.:|::..     .|...|..|.:                ..:|  :::.
pombe   638 ---------SALAPDAIRETLRSRYLDELGMRCRNQLFSRLDQAPYEPSTKNFDRGTIP--SVLA 691

Human   542 VDPGYKHGCKLAII--------SPTSQILHTDVVYLHCGQGFRE-AEKIKTLLLNFNCSTVVIGN 597
            |..| |.....|||        .||..:...|:..|.....|.| .||:|..::.      |.|.
pombe   692 VSNG-KGESSDAIICVFVDDVGEPTDSLKLADLRDLANQAMFAEFVEKVKPDVIG------VSGM 749

Human   598 GTACRETEAYFADLIMKNYFAPLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRV 662
            ..:..:...:..|.:..:  .|:|::  :|::..|.:|..|..|..|.|.|.......|::||.|
pombe   750 SVSAHKIRQHVQDSLTSH--EPVDLI--MVNDEVARLYQNSTRAVDEFPTLPTISCYCVALARYV 810

Human   663 QDPLAELVKI--EPKHIGVGMYQHDVSQTLLKATLDSVVEECVSFVGVDIN--ICSEV---LLRH 720
            |:||.|...:  :...:....:||.:...:|...|::.:.:..|.||:|||  :.::.   :|.:
pombe   811 QNPLFEYAAMGRDLMSLSFDPWQHLLPPDVLWKYLETALVDISSLVGIDINEAVTNKYEANILPY 875

Human   721 IAGLNANRAKNIIEWREKNGPFI-NREQLKKVKGLGPKSFQQCAGFIRI-NQDYIRTFCSQQTET 783
            ||||...:|..:::.....|..| ||..|...:.:..|.|..|:.|..| |.:|           
pombe   876 IAGLGPRKADYVLKKIAATGGRIDNRSDLISKQIMSRKVFINCSSFFIIPNDEY----------- 929

Human   784 SGQIQGVAVTSSADVEVTNEKQGKKKSKTAVNVLLKPNP--LDQTCIHPESYDIAMRF------- 839
                                                ||.  ||.|.||.|.|::|.:.       
pombe   930 ------------------------------------PNMDILDSTRIHNEDYELARKMASDALEL 958

Human   840 -------LSSIGGTLYEVGKPEMQQKINSFLEKEGMEKIAERLQTTVH-----TLQVIIDGLSQP 892
                   |.:..|.:|.:    :::.....|::..:|:.|::|:...|     ||:.|...|..|
pombe   959 DEEDIEELETNRGVVYHL----LEENETGKLDELVLEEYADQLEREFHQKKRNTLEKIRLELKDP 1019

Human   893 ESFDFRTDFDKPDFKRSIVCL-----EDLQIGTVLTGKVENATLFGIFVDIGVGKSGLIPIRNVT 952
            .. :.|..|.|.......:.|     |:||...::...|...|...:.|.:..|..|.|....|:
pombe  1020 YG-EQRNVFHKLTPSEIFLMLTGENPEELQADAIVPVNVRRVTNRFVAVKLDCGIDGNIKADEVS 1083

Human   953 EAKLSKTKKRRSLGLGPGERVEVQVLNIDIPRSRITLDL 991
            :..:...:.     |..|:.||..::::|.....:.|.|
pombe  1084 DDFIPPPQL-----LQVGQTVEGVIISLDEANFMVDLSL 1117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SRBD1NP_060549.4 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..81 15/57 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 120..165 2/49 (4%)
Tex 208..991 CDD:225094 189/919 (21%)
Tex_N 219..414 CDD:286460 53/246 (22%)
Tex_YqgF 538..663 CDD:293526 31/133 (23%)
HHH_3 705..767 CDD:289597 20/67 (30%)
S1_Tex 919..990 CDD:240190 12/70 (17%)
spt6NP_594487.2 S-antigen <21..65 CDD:283426
SPT6_acidic 53..133 CDD:291306
HTH_44 281..394 CDD:291314 23/132 (17%)
Tex 294..1188 CDD:225094 199/962 (21%)
YqgF 683..821 CDD:258777 37/150 (25%)
HHH_7 822..925 CDD:291309 25/102 (25%)
DLD 935..1042 CDD:291540 25/111 (23%)
S1_like 1050..1118 CDD:299122 14/73 (19%)
SH2_2 1142..1354 CDD:291307
SH2_Nterm_SPT6_like 1166..1256 CDD:198174
SH2_Cterm_SPT6_like 1266..1355 CDD:198182
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2183
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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