DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBM28 and CG4806

DIOPT Version :10

Sequence 1:NP_060547.2 Gene:RBM28 / 55131 HGNCID:21863 Length:759 Species:Homo sapiens
Sequence 2:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster


Alignment Length:90 Identity:22/90 - (24%)
Similarity:33/90 - (36%) Gaps:26/90 - (28%)


- Green bases have known domain annotations that are detailed below.


Human    13 SSQALGNIVGC--RISHGWKEGNEPVTH-----------------WKAII-LGQLPTNPSLYLVK 57
            ::.|.|...||  |.|..|..|...|..                 .||:. :.:...:.|:.|| 
  Fly    17 ATSAFGATGGCSWRASSSWFGGEICVLQKVYDDCQETADFTECLKQKAVTSISRAIDSDSIQLV- 80

Human    58 YDGIDSVYGQELHSDER----ILNL 78
             ||:..|..:.:.:||.    ||.|
  Fly    81 -DGVTLVKQKNVSADENSESTILGL 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM28NP_060547.2 RRM1_RBM28_like 5..81 CDD:409847 22/90 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..105
RRM2_RBM28_like 115..190 CDD:409848
PABP-1234 126..721 CDD:130689
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..330
RRM3_RBM28_like 335..417 CDD:409849
RRM4_RBM28_like 487..581 CDD:409850
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 594..759
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 13/58 (22%)
RRM3_Nop4p 229..312 CDD:410077
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
Blue background indicates that the domain is not in the aligned region.

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