DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBM28 and Caper

DIOPT Version :10

Sequence 1:NP_060547.2 Gene:RBM28 / 55131 HGNCID:21863 Length:759 Species:Homo sapiens
Sequence 2:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster


Alignment Length:184 Identity:53/184 - (28%)
Similarity:93/184 - (50%) Gaps:15/184 - (8%)


- Green bases have known domain annotations that are detailed below.


Human     5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFE 69
            |:|..:|....|:..|||.||.||.|:...::|...:|..:|..|:.|...|.|..||    ...
  Fly   238 TVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALAL----GLS 298

Human    70 GCK-INVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTV 133
            |.: :.|.:   .:::...||.:.:|: .|..:||:....:     ||.:.:|.|..:||.|:.:
  Fly   299 GQRLLGVPI---MVQHTQAEKNRLQNA-APAFQPKSHTGPM-----RLYVGSLHFNITEDMLRGI 354

Human   134 FAQFGAVLEVNIPRKPD-GKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAV 186
            |..||.:..:.:....: |:.:|:||:.:.|..:|.|||:.:|..|:.||.:.|
  Fly   355 FEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKV 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM28NP_060547.2 RRM1_RBM28_like 5..81 CDD:409847 23/76 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..105 6/20 (30%)
RRM2_RBM28_like 115..190 CDD:409848 24/73 (33%)
PABP-1234 126..721 CDD:130689 20/62 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..330
RRM3_RBM28_like 335..417 CDD:409849
RRM4_RBM28_like 487..581 CDD:409850
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 594..759
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 53/184 (29%)
Blue background indicates that the domain is not in the aligned region.

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