DRSC/TRiP Functional Genomics Resources

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Protein Alignment TAPBPL and igcm-1

DIOPT Version :9

Sequence 1:NP_060479.3 Gene:TAPBPL / 55080 HGNCID:30683 Length:468 Species:Homo sapiens
Sequence 2:NP_508166.1 Gene:igcm-1 / 180433 WormBaseID:WBGene00018215 Length:1073 Species:Caenorhabditis elegans


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TAPBPLNP_060479.3 IG_like 198..300 CDD:214653
Ig 204..300 CDD:299845
IgC_Tapasin_R 266..396 CDD:143248
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 449..468
igcm-1NP_508166.1 Ig 45..119 CDD:299845
Ig 146..226 CDD:299845
Ig_3 245..316 CDD:290638
IG_like 258..329 CDD:214653
IG_like 338..398 CDD:214653
IGc2 347..398 CDD:197706
Ig_2 429..513 CDD:290606
IG_like 437..513 CDD:214653
Ig 537..615 CDD:143165
IG_like 644..728 CDD:214653
IGc2 646..719 CDD:197706
FN3 733..843 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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