DRSC/TRiP Functional Genomics Resources

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Protein Alignment TRNAU1AP and CstF64

DIOPT Version :10

Sequence 1:NP_060316.1 Gene:TRNAU1AP / 54952 HGNCID:30813 Length:287 Species:Homo sapiens
Sequence 2:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster


Alignment Length:130 Identity:32/130 - (24%)
Similarity:59/130 - (45%) Gaps:24/130 - (18%)


- Green bases have known domain annotations that are detailed below.


Human     4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 68
            |:::|::.....|..:...|:.:| .|:|:|::.:|.:|.|.|:.|.|:.|..||...:..:||.
  Fly    17 SVFVGNIPYEATEEKLKEIFSEVG-PVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGY 80

Human    69 PLPG--------ATPAKRFKLNYATYGKQ----------PDNSPE-YSLFVGDLTPDVDDGMLYE 114
            .:.|        .|...|.::.....|.|          |:::|| .:..|..|.|:    .:||
  Fly    81 EIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPELITKTVASLPPE----QMYE 141

Human   115  114
              Fly   142  141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRNAU1APNP_060316.1 RRM1_SECp43 4..87 CDD:410022 22/90 (24%)
RRM2_SECp43 95..176 CDD:410024 6/21 (29%)
Trnau1ap <206..284 CDD:465438
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 20/77 (26%)
CSTF2_hinge 111..190 CDD:433869 8/35 (23%)
CSTF_C 377..416 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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