DRSC/TRiP Functional Genomics Resources

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Protein Alignment SOHLH2 and LOC100535945

DIOPT Version :9

Sequence 1:NP_060296.2 Gene:SOHLH2 / 54937 HGNCID:26026 Length:425 Species:Homo sapiens
Sequence 2:NP_001315623.1 Gene:LOC100535945 / 100535945 -ID:- Length:913 Species:Danio rerio


Alignment Length:313 Identity:70/313 - (22%)
Similarity:112/313 - (35%) Gaps:128/313 - (40%)


- Green bases have known domain annotations that are detailed below.


Human   111 ISGHGMDI---------------ALTEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQ 160
            :||||..:               ||..|.| ||:|.|..:.:...|.||....:.|        |
Zfish   631 LSGHGHSVSSQSSTISSLLTQQTALLVPKT-EKLSPVQMHTSDRSSLTVSFPGSMG--------Q 686

Human   161 RSYSEHLGYFPTDLFACSESLRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLR 225
            .|        ||.  |..:|..:    :|.:|.::..:     :.|.|.|:.||..||...:.|.
Zfish   687 TS--------PTS--AAEKSPES----KLESSRTDTRR-----ITHISAEQKRRFNIKLGFDTLH 732

Human   226 TLL------PYVKGRKNDAASVLEATVDYVKYIREKISPAVMAQITE----------ALQSNMRF 274
            :|:      |.:|..|   |:.|:.|.:|:..::::     .||:.|          ||.|.:..
Zfish   733 SLVTTLSSQPSIKISK---ATTLQKTAEYISKMQQE-----RAQLHEEAQRLRDQILALNSAINV 789

Human   275 CKKQQTPIELSLPGT-------------------VMAQ-------------------RENSVMST 301
            |::|       ||.|                   |.||                   ..||::||
Zfish   790 CQQQ-------LPATGVPITRQRFDHMREKFREYVRAQTLQNWKFWIFSIIIEPLFESFNSMVST 847

Human   302 YSPERGLQFLTNTC-----W--NGCSTPDAESSLDEAVRVPSSSASENAIGDP 347
            .|       :.:.|     |  ..||.|....::..::|:.|:|.|  .:.||
Zfish   848 AS-------VDDLCRSTLSWLDQHCSLPTLRPTVLSSLRLLSTSTS--ILSDP 891

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SOHLH2NP_060296.2 HLH 197..257 CDD:238036 16/65 (25%)
LOC100535945NP_001315623.1 HLH 709..767 CDD:238036 16/70 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
NCBI 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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