DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment YTHDF1 and Ythdc1

DIOPT Version :10

Sequence 1:NP_060268.2 Gene:YTHDF1 / 54915 HGNCID:15867 Length:559 Species:Homo sapiens
Sequence 2:NP_647811.2 Gene:Ythdc1 / 38420 FlyBaseID:FBgn0027616 Length:721 Species:Drosophila melanogaster


Alignment Length:434 Identity:97/434 - (22%)
Similarity:159/434 - (36%) Gaps:92/434 - (21%)


- Green bases have known domain annotations that are detailed below.


Human   169 FHSDTLSKAPGMNSLEQGMVGLKIGDVSSS--AVKTVGSVVSSVALTGVLSGNGGTNVNMPVSKP 231
            |..:|.|:|...|.          ||.|.|  ::.:|.:..||      |:|:.......| :|.
  Fly    39 FEFNTRSEASESNG----------GDSSDSEPSISSVSTATSS------LAGSSKRKTKKP-AKQ 86

Human   232 TSWAAIASKPAKPQPKMKTKSGPV---MGGGLPPPPIKHNMDIGTWDNKGPVPKAPVPQQAPSPQ 293
            :...|:.:|.:|...|.|.|..|.   :.||..    |...|.||...........|..::|..:
  Fly    87 SPQPAVETKSSKSSAKNKAKREPTPEELNGGKK----KKRTDSGTKKTTSSEASDKVKSKSPDTE 147

Human   294 -AAPQPQQVAQPLPA-----------------QPPALAQPQYQSPQQPPQTRWVAPRNRNAAFGQ 340
             ..|..::....:|:                 :.|:|  |..:|..:...:.......||...|.
  Fly   148 DRQPSAKKSRTKIPSNANDSAGHKSDLSEAEDEKPSL--PTLESDSESSDSDSGTQHKRNGGNGG 210

Human   341 SGGAGSDSNSPGNVQPNSAPSVESHPVLEKLKAAHSYNPKEFEWNLK------SGRVFIIKSYSE 399
            ..|.|..|:.....:.:|...           ..||::.|.:::..|      ..|.|:|||.:.
  Fly   211 GNGRGKPSSKSSTPEKDSVGG-----------GTHSHSQKGYDYMTKLNYLFRDTRFFLIKSNNS 264

Human   400 DDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGV 464
            |::..|...|:|.:....:..|:.||:   ....|.|:||||.||.|.|.|.|.:|.........
  Fly   265 DNVQLSKNKSVWATLPQNDANLNQAFK---EARNVLLIFSVNESGKFAGFARMAAPSRRDIPQVA 326

Human   465 W------SQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEV------------ 511
            |      |.....|..::.||..|::..|...|:....|:.|||...||.||:            
  Fly   327 WVLPPSISPKALGGVIELDWICRKELSFNATLHLHNTWNEGKPVKIGRDGQEIEPKIGGELCRLF 391

Human   512 PLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQS 555
            |.::..::..|:...|.|..:.        |::...|:.|..:|
  Fly   392 PEDEQIELTPILKKSKETARVM--------REKGIHVIYKPPRS 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YTHDF1NP_060268.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..50
PHA03247 <227..364 CDD:223021 30/157 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 238..363 27/145 (19%)
Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold. <258..311 CDD:471953 10/70 (14%)
YTH 390..523 CDD:461195 42/150 (28%)
Ythdc1NP_647811.2 YTH 255..391 CDD:410979 41/138 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.