Protein Alignment rlim and toe-4

DIOPT Version :9

• Sequence 1: NP_001016091.1
• Gene: rlim / 548845
• XenbaseID: XB-GENE-492020
• Length: 639
• Species: Xenopus tropicalis
• Sequence 2: NP_493231.1
• Gene: toe-4 / 173144
• WormBaseID: WBGene00012194
• Length: 489
• Species: Caenorhabditis elegans
• Alignment Length: 546
• Identity: 124/546 - (22%)
• Similarity: 193/546 - (35%)
• Gaps: 123/546 - (22%)

 Frog   126 QSWRAVSRTNPNSGDFRFSLEINVNRT-SGNPSM---PSLEQSSEMPGAEDMEVSSQGENENEPE 186
            ||...|:.|.| .|| |..||..:.|. ..||.:   |...|.:..|..:.|....|.:|
 Worm    13 QSATVVAETQP-FGD-RCMLESLIRRPFCMNPQLQTHPYDRQPTTAPRLQMMPRRDQTQN----- 70

 Frog   187 PVAPRVAQAEVTEEAPVQRGQRRARSRSPD----QRRTRARTDRSRSPLHQAVE--------PPI 239
               |.:|:...|    |.|.:.|.|.|..:    :|....:||  ...:.:.::        ..:
 Worm    71 ---PVIAELMST----VTRVRDRKRQRDEEAMYPRRSVGLQTD--TEDVSEVLDGGTRISDMKRV 126

 Frog   240 RRAQHSSSQTVDASSTEEAEGSSRTRHHVSSQMQNSSSSNETEGSSRT-RQHITARQQALGTEGQ 303
            ||.:.....::|..:.|.:..::....|......||||...|..||.: |.......|.:....:
 Worm   127 RREELLDQSSLDGITFETSGTNTSDEPHSQIITSNSSSLPSTSASSSSDRPRAMRSNQEMRQARR 191

 Frog   304 SQSQTQTQSQSQTQTQSQTQSQSTVHLSNPESRSSSQPPQTDSSSNAETTGTGQRPPTIVLDLQV 368
            ::.|.|||.:||.........|.|..:...|....:..|........:    .|:|   :|.:|:
 Worm   192 ARRQRQTQHESQRMQLEHRLQQITGPVPGSEHNCMTGCPHLHQQQQQQ----HQQP---LLHIQL 249

 Frog   369 RRVRPGDYRQRDSIANRTRSRSQTPNNTVTYESERGGFRRTFSRSERAGVRTYVSTIRIPIRRIL 433
            ..:.|               :.||..|:|:.....|...|....:......:...|...|:..:|
 Worm   250 NPIPP---------------QPQTGPNSVSPTIAPGAMLRAHPLASTFPYFSLPLTQNYPVMMVL 299

 Frog   434 NTGLSETTSVAIQTMLRQIMTGFGELSYFMYNDNDTDPNNPTPVSPPAAVPGEAQNLVSPEPPAP 498
                 ...:||.|                             ..:..|||...|.....|:||.|
 Worm   300 -----PMAAVAQQ-----------------------------HAAAAAAVVAVAAAAAVPQPPPP 330

 Frog   499 IVEPPEPV--APVESEEGSNVSTSSARREGR---NSRGGVTFEESGSLPFLSLAQFFLLNED--- 555
               ||:|.  |||.....:|.....|.|...   ::.|.|     |....|..:|.||....
 Worm   331 ---PPQPTLHAPVPIRPQNNPYNLYAFRNSPINVHAPGYV-----GEYVELFRSQQFLFPTSERY 387

 Frog   556 -----------DDDQPRGLTKEQIDNL------STRNFGENDALKTCSVCITEYTEGNKLRKLPC 603
                       |.|.|.|.:|.:||..      :.:..||.|. .||:||::.:.:|..::||.|
 Worm   388 GIDRHHMFGGLDLDLPVGASKVEIDTFTIPTVYAKKTDGEEDE-DTCTVCLSSFEDGESIQKLRC 451

 Frog   604 SHEYHVHCIDRWLSENSTCPICRRAV 629
            :|.:|..||.:||..|..||:||..:
 Worm   452 NHVFHPECIYKWLDINKRCPMCREEI 477

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rlim	NP_001016091.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..28
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	67..403		63/293 (22%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	467..534		18/71 (25%)
		zf-RING_2	584..626	CDD:290367	17/41 (41%)
		PDZ-binding. /evidence=ECO:0000255	636..639
toe-4	NP_493231.1	RING-H2_RNF111_like	431..475	CDD:319388	18/43 (42%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910