DRSC/TRiP Functional Genomics Resources

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Protein Alignment TMED9 and opm

DIOPT Version :10

Sequence 1:NP_059980.2 Gene:TMED9 / 54732 HGNCID:24878 Length:235 Species:Homo sapiens
Sequence 2:NP_572994.1 Gene:opm / 32435 FlyBaseID:FBgn0264389 Length:242 Species:Drosophila melanogaster


Alignment Length:230 Identity:52/230 - (22%)
Similarity:100/230 - (43%) Gaps:35/230 - (15%)


- Green bases have known domain annotations that are detailed below.


Human    29 LWLATRGSALYFHI-----GETEKKCFIEEIPDETMVIGNYRTQ-LYDKQRE------EYQPATP 81
            :||...|..|...|     |..:.:.:.:|:   |:.:...:|: ||...|:      |||....
  Fly     4 IWLGMPGLVLLLSIAALLLGVQDAEAYDKEM---TVYVDAGKTECLYHSVRQGETIDFEYQVIDG 65

Human    82 G---LGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDI 143
            |   |.:...:.||...||::.....|..........|:::.|..::   ||:|....:...|.:
  Fly    66 GHGDLDISFTLLDPIGLVIVSDFKKPENVHRHEVAKEGDYRFCFDNS---FSMFNRKTVFFELIV 127

Human   144 Q-VGEHANDYAEIAAKDKLSEL------QLRVRQLVE-------QVEQIQKEQNYQRWREERFRQ 194
            : .||......:....|:|:.|      .::|:.:::       |:.:.::.|:..|..|.|.|.
  Fly   128 EREGEELQGDTQWNEADELTGLSRDEYYDMKVQDIMDFIGRIRLQLTKARQLQDVLRSHEARDRN 192

Human   195 TSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFF 229
            .:||..|:|..||::|...::.:|:.|:..|:|.|
  Fly   193 LAESNFQKVNHWSMVQISAMIGVGLIQVFMLRSIF 227

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
TMED9NP_059980.2 EMP24_GP25L 37..230 CDD:426051 49/222 (22%)
Required for interaction with STX17. /evidence=ECO:0000269|PubMed:21545355 121..160 7/39 (18%)
COPI vesicle coat-binding. /evidence=ECO:0000255 228..235 1/2 (50%)