DRSC/TRiP Functional Genomics Resources

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Protein Alignment SDK2 and fipi

DIOPT Version :9

Sequence 1:NP_001138424.1 Gene:SDK2 / 54549 HGNCID:19308 Length:2172 Species:Homo sapiens
Sequence 2:NP_787975.1 Gene:fipi / 33676 FlyBaseID:FBgn0031627 Length:450 Species:Drosophila melanogaster


Alignment Length:439 Identity:98/439 - (22%)
Similarity:187/439 - (42%) Gaps:63/439 - (14%)


- Green bases have known domain annotations that are detailed below.


Human   396 AVTSIA-----PNITRGPLDSTVI--DGMSVVLACETSGAPRPAITWQ--KGERILA-SGSVQLP 450
            |:|::|     .:::..|.:.:|:  ...|:::.|. |..|:..:.|:  |||.|.. .|.:.:.
  Fly    12 ALTAVAWANHHESLSLSPAEHSVVRYTNESLIVQCR-SPDPKVELHWKSPKGEIIREHKGRIHIE 75

Human   451 RFTPLESGSLLISPTHISDAGTYTCLATNSRGVDEASADLVVWARTRITKPPQDQSVIKGTQASM 515
            : |..|...::.:...::|.|.::|.|.:. .:...|.||:|:.:...|:.....:|.:|.:|::
  Fly    76 Q-TSTEQLKIVFAHIALADKGNWSCEAADG-SLHSKSFDLIVYQKITFTENATVMTVKEGEKATI 138

Human   516 VCGVTHDPRVTIRYIWEKDGATLGTESHPRIRLDRNGSLHISQTWSGDIGTYTCRVIS----AGG 576
            :|.|..:|:..:.:.:.....:.|.....:.|:..:|.| |::....|.|.|.||...    |..
  Fly   139 LCEVKGEPQPNVTWHFNGQPISAGAADDSKFRILADGLL-INKVTQNDTGEYACRAYQVNSIASD 202

Human   577 NDSRSAHLRVRQLPHAPEHPVATL--------STVERRAI-----NLTWTKPFDGNSPLIRYILE 628
            ...|:..:::...|...:.|..:|        :|:...|:     |.||.:..:          :
  Fly   203 MQERTVLMKIEHKPIWSKTPFVSLKYAYINGTATLMCEALAEPPANFTWYRKHN----------K 257

Human   629 MSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPEEPPTAP 693
            :..||..:|:   ..|...:|:|:..|..:....:|..|.||:|.   .:.|.|:...|:||:  
  Fly   258 LHSNNRLYTI---QSDSYWSSLTIHVLNTSAFDNYRCRARNDLGT---IERTTRLEQGEKPPS-- 314

Human   694 PQNVIASG---RTNQSIMIQWQPPPESHQNGILKGYIIRYCL-------AGLPVGYQFKNITDAD 748
            |.|....|   .|...::...:.||:|...  :.|:.|.|..       ||.....:.|:....:
  Fly   315 PANFQLRGFNSNTFDVVLSAPRGPPDSPMG--VNGFRIEYMTEMEFKTDAGKWTNARRKDYAFEE 377

Human   749 VNNLLLEDLIIWTNYEIEVAAYNSAGLGVYSSKVTEW-TLQGVPTVPPG 796
            ....||.:|...|.|.:..|:.|.||...: :||.:: ||...|.|..|
  Fly   378 GATFLLTNLEPDTVYLVRAASRNLAGFSDF-TKVEKYKTLSLEPRVSSG 425

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
SDK2NP_001138424.1 Ig 27..109 CDD:299845
IG_like 40..109 CDD:214653
I-set 120..203 CDD:254352
Ig 132..210 CDD:299845
IG_like 222..304 CDD:214653
IGc2 233..286 CDD:197706