DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SDK2 and Dscam4

DIOPT Version :9

Sequence 1:NP_001138424.1 Gene:SDK2 / 54549 HGNCID:19308 Length:2172 Species:Homo sapiens
Sequence 2:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster


Alignment Length:1872 Identity:429/1872 - (22%)
Similarity:700/1872 - (37%) Gaps:496/1872 - (26%)


- Green bases have known domain annotations that are detailed below.


Human    48 CMAEGSWPLEFKWLHNNRELTKFS-LEY-----RYMITSLDRTHAGFYRCIVRNRMGALLQRQTE 106
            |:..|....:..|||:.:.:.:.: :|.     |.:|..:.:...|.|:|.|.|.. ..:|...|
  Fly   351 CIVSGHPVHDVNWLHDGKPILRDNRVEILTDPPRLIIKKVQKEDPGMYQCFVSNEW-EQIQSTAE 414

Human   107 VQVA-----YMGSFEEGEKHQSVSHGEAAVIRAPRIASFPQPQVTWFRDGRKIPPSSRIA----I 162
            :|:.     .:..|.|    |::..|....::.....: |.||.||..||..||.|||..    :
  Fly   415 LQL
GDASPELLYWFSE----QTLQPGPTVSLKCVATGN-PLPQFTWSLDGFPIPDSSRFLVGQYV 474

Human   163 TLENTLV----ILSTVAPDAGRYYVQAVNDKNGDNKTSQPITLTVENVGGPADPIAPTIIIPPKN 223
            |:.:.::    |.:....|.|.|...|   :|...|.|....:.:..:        |.|...||.
  Fly   475 TIHDDVISHVNISNVKEEDGGEYTCTA---QNAIGKVSHSAKVNI
YGL--------PYIREMPKI 528

Human   224 TSVVAGTSEVTLECVANARPLIKLHIIWKKDGVLLSGGISDHNRRLTIPNPTGS----------D 278
            |.:  ..|::.::|.....|:.|:|  |::||..|     ..|||....| .|:          |
  Fly   529 TGI--SGSDLIVKCPVAGYPIDKIH--WERDGQTL-----PINRRQRAYN-NGTLIIEQLQRLED 583

Human   279 AGYYECEAVLRSSSVPSVVRGAYLSVLEPPQFVKEPERHITAEMEKVV--DIPCQ-AKGVPPPSI 340
            ||.|.|.|  ::....:..|...:.||.||:.:  |.:.:|..:.:.:  .|.|| .:|..|.|.
  Fly   584 AGTYTCMA--QNKQKQTSRRNVEIQV
LVPPKIM--PIQAMTNMLREGMRAAISCQILEGDLPVSF 644

Human   341 TWYKDAAVV-----EVEKLTRFRQRND--GGLQISGLVPDDTGMFQCFARNAAGEVQTSTYLAVT 398
            .|.::...:     ||     ||:.::  ..|.|..:..|.:|.:.|.|.|.||..:.:..|.| 
  Fly   645 RWERNGKPLIGTGNEV-----FRRLDEYSASLVIEHISSDHSGNYTCIASNVAGTERFTVPLTV- 703

Human   399 SIAPNITRGPLDSTVIDGMSVVLACETSGAPRPAITWQK------GE--RILASGSVQLPRFTPL 455
            ::.|.....|.||:...|..|:|.|::||.|.|.|||:|      ||  ..|...:|||     .
  Fly   704 NVPPKWILEPKDSSAQAGADVLLHCQSSGYPTPTITWKKAIGPTPGEYKDFLYEPTVQL-----F 763

Human   456 ESGSLLISPTHISDAGTYTCLATNSRGVDEASADLVVWARTRI-----TKPPQDQSVIKGTQASM 515
            .:|::..........|.:.|.|.|:.|   :....|::.:..:     ||..| .||.||.|..:
  Fly   764 PNGTIFFKKISKESQGHFLCEAKNNIG---SGVSKVIFLKVNVPAHFQTKTKQ-ISVAKGKQVHV 824

Human   516 VCGVTHDPRVTIRYIWEKDGATL-----GTESHPRIR---LDRN--GSLHISQTWSGDIGTYTCR 570
            .|.|..|..:..::   |..||.     ..:|...||   ||..  ..|.||.|:..|.|.|.|:
  Fly   825 QCNVQGDNPIDFKW---KIQATQQYLDESLDSRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQ 886

Human   571 VISAGGNDSRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRY------ILEM 629
            ..:|.|.|..|..|.|:::|..|::  ..:::.:.|::.|||::||.||||:..|      |.::
  Fly   887 ASNAFGQDEMSIQLIVQEVPEQPKN--LRINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQISDI 949

Human   630 SENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPEEPPTAPP 694
            .:|....|:..|.     |.:.::.|.||::|..|:.|.|.:|..:|| :..:|:..||.|:.||
  Fly   950 WQNAEHLTIAGAQ-----TVINIQQLRPAKAYHIRMSAENKLGASEFS-EVVQVTTLEEVPSGPP 1008

Human   695 QNVIASGRTNQSIMIQWQPPPESHQNGILKGYIIRYCLAGLP--------VGYQFKNITDADVNN 751
            ..|.|..:::..|.:.|..|...|.||||.||.:.|.::..|        .|:.||.:   :|.:
  Fly  1009 LAVRAEPKSSTEIFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTV---EVRS 1070

Human   752 -----LLLEDLIIWTNYEIEVAAYNSAGLGVYSSKVTEWTLQGVPTVPPGNVHAEATNSTTIRFT 811
                 .:|.:|..:|.|.:.|.||.|.|.|..|.::...|::.||:.||.:...:...||:|..|
  Fly  1071 HFGGETVLANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPESPQCDVLGSTSIYIT 1135

Human   812 WNAPSPQFINGINQGYKL--IAWEPEQEEEVTMVTARPNFQDSIHVGFVSGLKKFTEYFTSVLCF 874
            |:.|.....||..:|||:  |:.:...|.:..:|.:...:..      :..|:|:|.|...||.:
  Fly  1136 WSPPDIDGQNGKIKGYKVFYISVDELYETDPEVVKSTNQYVT------IENLRKYTNYTVWVLAY 1194

Human   875 TTPGDGPRSTPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTN 939
            |..|||.::.|...|||||||.....:.......:.:.:||..|...||.:|||           
  Fly  1195 TKVGDGMKTKPFYCRTHEDVPSAPQAIKAIPASSSKIIISWLPPDLPNGDITGY----------- 1248

Human   940 TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVPPELPGPPTNLGISNI 1004
               |.|:                       :|...|:        ..|....|.||...:..:..
  Fly  1249 ---TFYM-----------------------SMLEGGR--------EEGTHKRLLGPFVEMHETVR 1279

Human  1005 GPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLN--PFTCY 1067
            ...|.|.||            ||..:.  .:||||:            .:.:.||..|  |....
  Fly  1280 TQESATYQF------------WLTAST--KMGEGEK------------TQVVTVPPNNKVPARIV 1318

Human  1068 SFRMRQVNIVGTSPPSQ----PSRKIQTLQAPPDMAPANVSLRTASETSLWLRWMPLPEMEYNGN 1128
            ||..|.|     :|..:    |.||:.        |||.|::           |           
  Fly  1319 SFSQRIV-----TPWKEHLELPCRKVG--------APAPVTI-----------W----------- 1348

Human  1129 PESVGYKIKYSRSDGHGKTLSHVVQDRVERDYTIEDLEEWTEYRVQVQAFNAIGS------GPWS 1187
                       |.|||....|  .:..:.::.|:        |..:.||.:| |:      ..|.
  Fly  1349 -----------RQDGHNMETS--ARKTIAKNGTL--------YMKECQASDA-GNYTCSVENTWG 1391

Human  1188 Q-TVVGRTRESVPSSGPTNVSALATTSSSMLVRWSEVPEADRNGLVLGYKVMYKEKDSDTQPRFW 1251
            : .:|......||...| |::.:...:.|:|:.|.:  .:.....:|||.:.||..:.|     |
  Fly  1392 KDEIVYNIVVKVPPEAP-NLTVINAYTDSLLLEWMD--NSHGGSPILGYVINYKRDNGD-----W 1448

Human  1252 --LVEGNSSRSAQLTGLGKYVLYEVQVLAFTRIGDGSP---------SHPPILERTLDDVPGPPM 1305
              |...:.:.|..||.|.....|::.:.|:.:||.|.|         .:||:..:....:..   
  Fly  1449 EELQVDSKTTSHLLTNLWCGTRYQLYITAYNKIGTGLPCDIVNSYTKGNPPVQPKHSQMITN--- 1510

Human  1306 GILFPEVRTTSVRLIWQPPAAPNGI-ILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPES 1369
                   .:||| ..|.......|. ||.:.|..|:...::.......:.|:.|.||.:.|.|.:
  Fly  1511 -------NSTSV-TCWLDSWGDGGCGILYFMIESRVYGRSSWAVVSNHIPPTERIYTVSDLVPGT 1567

Human  1370 VYLFRITAQTRKGWGEAA-EALVVTTE----KRDRPQPPSRPMVQQEDVRARSVLLSWEPGSDGL 1429
            .|..::||....|...|. ....::|:    ..|...|.|.                       |
  Fly  1568 KYQLKVTAHNNAGSTTAIYNFTTLSTQGVIYNNDHSTPVSH-----------------------L 1609

Human  1430 SPVRYYT------------------------IQTRELPSGRWALHSASVSHNAS----------- 1459
            |.:.:|.                        ::.|:|.| :..|.|:|:|.:.|           
  Fly  1610 SDLPFYANFKLLLPICFSLLMLLALIGAALFLRKRKLAS-QARLASSSMSESPSLANLQNKQNRD 1673

Human  1460 -SFIVDRLKPFTSYKFRVKATNDIGDSEFSEESESLTTLQAAPDEAPTILSVTPHTTTSVLIRWQ 1523
             .::..|..|.||.. |...:||.|....:|.:|             .|..:.|:.|..  :..|
  Fly  1674 QQYLAVRCNPGTSAP-RGSNSNDSGSFGKAEGNE-------------YIEDICPYATFQ--LNKQ 1722

Human  1524 PPAEDKING-ILLGFRIRYRELLYEGLRG-FTLRGI----------------------------- 1557
            ..:|...:| :..|        .|..:|| |....:                             
  Fly  1723 TYSESSYSGNVYSG--------PYHSVRGSFVYHDVKPESYHSKEPEYTKVRRKVGRLRDPHSES 1779

Human  1558 ---NNPGATWAELTSMYSMRNLSRPSLTQYELDNLNKHRRYEIRMSVYNAV---------GEGPS 1610
               :|||:|.:|:..:.::    ...:|:|  |.|......::.....|:.         .|..|
  Fly  1780 QESDNPGSTDSEVRKILTL----HIPITEY--DTLGSESDNDVSARALNSAKYRAQRDTQDETSS 1838

Human  1611 SPPQEVFVGEAVPTAAPRNVVVHGATATQLDVTWEPPPLDSQNGDIQGYKIYFWEAQRGNLTERV 1675
            |       .|..||:..|.               ..||..::.|...|        ..|....|.
  Fly  1839 S-------SETTPTSMTRK---------------SKPPFAARKGGKPG--------TSGKRHVRS 1873

Human  1676 KTLFLAENSVKLKNLTGYTA----YMVSVAAFNAAGDGPRSTPTQGQTQQAA 1723
            .:.:.:.|.....:::.|..    ::...|.|:.|.|   .|.||...:..|
  Fly  1874 SSGYSSHNEETTFSISNYPPNYQDHINPPARFSDAND---KTKTQTSPRMRA 1922

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SDK2NP_001138424.1 Ig 27..109 CDD:299845 15/66 (23%)
IG_like 40..109 CDD:214653 15/66 (23%)
I-set 120..203 CDD:254352 23/90 (26%)
Ig 132..210 CDD:299845 21/85 (25%)
IG_like 222..304 CDD:214653 23/91 (25%)
IGc2 233..286 CDD:197706 18/62 (29%)
I-set 308..397 CDD:254352 24/98 (24%)
Ig 326..394 CDD:143165 20/77 (26%)
I-set 402..492 CDD:254352 28/97 (29%)
Ig 416..492 CDD:299845 24/83 (29%)
Ig 502..586 CDD:299845 30/93 (32%)
IG_like 502..586 CDD:214653 30/93 (32%)
FN3 590..681 CDD:238020 28/96 (29%)
FN3 693..786 CDD:238020 31/105 (30%)
FN3 794..890 CDD:238020 27/97 (28%)
FN3 895..983 CDD:238020 13/87 (15%)
FN3 993..1087 CDD:238020 22/99 (22%)
FN3 1099..1194 CDD:238020 18/101 (18%)
FN3 1201..1290 CDD:238020 23/99 (23%)
FN3 1301..1394 CDD:238020 20/94 (21%)
FN3 1400..1484 CDD:238020 20/119 (17%)
FN3 1503..1616 CDD:238020 24/155 (15%)
FN3 1626..1719 CDD:238020 16/96 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1707..1729 5/17 (29%)
FN3 1724..1805 CDD:238020 429/1872 (23%)
FN3 1837..1916 CDD:238020
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2039..2067
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2098..2172
PDZ-binding. /evidence=ECO:0000250|UniProtKB:Q6V4S5 2166..2172
Dscam4NP_001261571.1 Ig 31..124 CDD:416386
Ig strand A 32..35 CDD:409353
Ig strand A' 41..45 CDD:409353
Ig strand B 48..57 CDD:409353
Ig strand D 75..78 CDD:409353
Ig strand E 83..88 CDD:409353
Ig strand F 101..109 CDD:409353
Ig strand G 112..124 CDD:409353
Ig 235..326 CDD:416386
Ig strand A 235..238 CDD:409353
Ig strand A' 244..248 CDD:409353
Ig strand B 251..258 CDD:409353
Ig strand C 266..271 CDD:409353
Ig strand C' 276..279 CDD:409353
Ig strand D 285..289 CDD:409353
Ig strand E 292..298 CDD:409353
Ig strand F 305..313 CDD:409353
Ig strand G 316..326 CDD:409353
IgC2_3_Dscam 329..417 CDD:409549 15/66 (23%)
Ig strand B 347..351 CDD:409549 429/1872 (23%)
Ig strand C 360..364 CDD:409549 0/3 (0%)
Ig strand E 383..387 CDD:409549 1/3 (33%)
Ig strand F 397..402 CDD:409549 2/4 (50%)
Ig strand G 410..413 CDD:409549 1/2 (50%)
IgI_4_Dscam 422..516 CDD:409548 25/101 (25%)
Ig strand B 439..443 CDD:409548 0/3 (0%)
Ig strand C 452..456 CDD:409548 2/3 (67%)
Ig strand E 482..486 CDD:409548 0/3 (0%)
Ig strand F 496..501 CDD:409548 1/4 (25%)
Ig strand G 509..512 CDD:409548 1/2 (50%)
IgI_5_Dscam 520..607 CDD:409550 26/98 (27%)
Ig strand B 536..540 CDD:409550 0/3 (0%)
Ig strand C 549..553 CDD:409550 2/5 (40%)
Ig strand E 571..575 CDD:409550 1/3 (33%)
Ig strand F 586..591 CDD:409550 2/4 (50%)
Ig strand G 600..603 CDD:409550 1/2 (50%)
Ig 610..703 CDD:416386 25/99 (25%)
Ig strand A 611..613 CDD:409353 1/1 (100%)
Ig strand A' 620..624 CDD:409353 1/3 (33%)
Ig strand B 627..636 CDD:409353 3/8 (38%)
Ig strand C 641..648 CDD:409353 3/6 (50%)
Ig strand C' 650..652 CDD:409353 0/1 (0%)
Ig strand D 659..664 CDD:409353 4/9 (44%)
Ig strand E 668..675 CDD:409353 2/6 (33%)
Ig strand F 682..690 CDD:409353 3/7 (43%)
Ig strand G 693..702 CDD:409353 1/8 (13%)
IgI_7_Dscam 706..801 CDD:409546 29/102 (28%)
Ig strand B 724..728 CDD:409546 2/3 (67%)
Ig strand C 737..741 CDD:409546 2/3 (67%)
Ig strand E 766..770 CDD:409546 1/3 (33%)
Ig strand F 780..785 CDD:409546 1/4 (25%)
Ig strand G 794..797 CDD:409546 0/2 (0%)
Ig 818..904 CDD:416386 28/88 (32%)
putative Ig strand B 820..827 CDD:409353 1/6 (17%)
putative Ig strand C 835..841 CDD:409353 1/8 (13%)
putative Ig strand C' 853..856 CDD:409353 1/2 (50%)
putative Ig strand D 862..866 CDD:409353 2/3 (67%)
putative Ig strand E 868..874 CDD:409353 2/5 (40%)
putative Ig strand F 881..889 CDD:409353 3/7 (43%)
putative Ig strand G 892..902 CDD:409353 4/9 (44%)
FN3 906..999 CDD:238020 29/100 (29%)
FN3 1006..1110 CDD:238020 31/106 (29%)
fn3 1117..1203 CDD:394996 26/91 (29%)
FN3 1215..1307 CDD:238020 27/162 (17%)
Ig <1334..1401 CDD:416386 21/118 (18%)
Ig strand C 1345..1349 CDD:409353 2/36 (6%)
Ig strand D 1363..1366 CDD:409353 0/2 (0%)
Ig strand E 1367..1372 CDD:409353 2/12 (17%)
Ig strand F 1380..1388 CDD:409353 1/7 (14%)
Ig strand G 1394..1401 CDD:409353 1/6 (17%)
FN3 1405..1494 CDD:238020 23/96 (24%)
FN3 1499..1580 CDD:238020 19/91 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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