DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG46428 and Hmgb1l2

DIOPT Version :10

Sequence 1:NP_001369095.1 Gene:CG46428 / 54520436 FlyBaseID:FBgn0286931 Length:93 Species:Drosophila melanogaster
Sequence 2:XP_038956208.1 Gene:Hmgb1l2 / 108349189 RGDID:11468204 Length:213 Species:Rattus norvegicus


Alignment Length:54 Identity:12/54 - (22%)
Similarity:26/54 - (48%) Gaps:4/54 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 AKIAGRKWREMTTAQKSVFVQIAEINRARLRARGRPSVPVGRVRRCHIKRVYKD 90
            :|....:|:.|:..:|..|..:|:.::||.....:..:|    .:...|:.:||
  Rat    42 SKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP----PKGETKKKFKD 91

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG46428NP_001369095.1 HMG-box_SF 10..65 CDD:438789 6/27 (22%)
Hmgb1l2XP_038956208.1 HMG-box_HMGB_rpt1 8..76 CDD:438794 8/33 (24%)
HMG-box_HMGB_rpt2 93..163 CDD:438795
Blue background indicates that the domain is not in the aligned region.

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