DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gclc and gcs-1

DIOPT Version :9

Sequence 1:NP_001285001.1 Gene:Gclc / 53581 FlyBaseID:FBgn0040319 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_495927.2 Gene:gcs-1 / 174438 WormBaseID:WBGene00001527 Length:654 Species:Caenorhabditis elegans


Alignment Length:711 Identity:356/711 - (50%)
Similarity:456/711 - (64%) Gaps:98/711 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGLLSEGSPLSWEETKALADHVREHGVNQFINLYHRLKDRQGDILKWGDEVEYIIVKFDDEQKVA 65
            ||||::||||:|.||....|::::||:.||||||||||.|.||.||||||:||.||||||..|..
 Worm     1 MGLLTKGSPLTWAETVPHIDYIKKHGIAQFINLYHRLKSRHGDQLKWGDEIEYTIVKFDDANKKV 65

  Fly    66 RVALRAQDLLAQLNEKE-----LADPNGVKSLWRPEYGAYMIEGTPGKPFGGLMAHFNLVEANMR 125
            ||:.:|::||.:|..:|     |...|  :.|||||:|:||||||||.|:|||:|.||:|||||:
 Worm    66 RVSCKAEELLNKLQAEEQVNAMLGTAN--RFLWRPEFGSYMIEGTPGMPYGGLIACFNIVEANMK 128

  Fly   126 YRREEVTELLAKDECVMSITNFPRLGAPNFTYP-LAQPRPEDPLSSARSLYFPDEAIFPGHPRFK 189
            .||:.|.:||.|||..:|| :||.||.|.||:| :|..|..|  .:|.|:::|::|:|.||||||
 Worm   129 LRRQVVKKLLKKDETCLSI-SFPSLGVPGFTFPEVAADRKND--DAANSVFWPEQAVFLGHPRFK 190

  Fly   190 TLTRNIRKRRGEKVSIKLKVFKDTKTKLP-VE-----GAP----PGEPDVVLLDAMGFGMGCCCL 244
            .||:||:.|||.||:|.:.:||||.|..| ||     |.|    ..:||.:.:|.||||||||||
 Worm   191 NLTKNIKGRRGSKVAINVPIFKDTNTPSPFVEDLSALGGPDDTRDAKPDHIYMDHMGFGMGCCCL 255

  Fly   245 QLTFQACNITEARRLYDQLAPLCPIMLALTAASPIYRGYLTESDCRWNVISSSVDCRTEEERGLA 309
            |:||||.|:.|||.|||||.|:.||:|||:||:||:||.|:..|.||::||:|||.||.|||||.
 Worm   256 QVTFQAVNVDEARWLYDQLTPITPILLALSAATPIFRGKLSNVDSRWDIISASVDDRTPEERGLE 320

  Fly   310 PLDQQKFRIAKSRYDSIDSYLSPEGAKYNDVPLTYDEKVYQRLVEGGIDHLLAQHVAHLFIRDTV 374
            ||...|:.|.||||||.|.|:.|....|||:||.|||.:|::|::|.||..||:|:||:||||..
 Worm   321 PLKNSKWVIDKSRYDSTDCYIYPCSVGYNDIPLQYDETIYKQLIDGNIDEPLAKHIAHMFIRDPH 385

  Fly   375 SLFSEKVHQNDNEDTDHFENIQSTNWQTMRFKPPPPNS-SIGWRVEFRPCEAQISDFENAAIVCF 438
            .:|.|::.|:|.:.::|||.|||:||..||||||||:: .|||||||||.|.|::||||||..||
 Worm   386 QVFRERIEQDDEKSSEHFETIQSSNWMNMRFKPPPPDAPEIGWRVEFRPTEVQLTDFENAAYCCF 450

  Fly   439 VVLLTRVILSYQLNFLTPISKVDENMQTAQKRDACRKEKFWFRKSSKTTEQRAAKAQAQAQAQAK 503
            ||||||:::|::|.:|.|||.|.|||:.||::||...:||.|||               ..|:.|
 Worm   451 VVLLTRMMISFRLTYLMPISMVTENMKRAQQKDAVLNQKFLFRK---------------GLAECK 500

  Fly   504 AQAQTNGKATLNGNGLANGNGNGSENSDQEEQQPLTNGSAKMNGHGSGTTNGTNGSSNGSSNGTD 568
            :               |..|..|||......|                                 
 Worm   501 S---------------APENLKGSEKCGPPSQ--------------------------------- 517

  Fly   569 SDHTDTDDEENELFQLLSINEIFNGKPNVFPGLVPLIRSYLQSMEVDTDTHCTIEQYLRFIQKRA 633
                  |.||      :||:||.|||.|.||||:.|||.:|.|.:||.||.|||.|||.||.|||
 Worm   518 ------DIEE------MSIDEIINGKKNGFPGLISLIRQFLDSADVDVDTRCTISQYLNFISKRA 570

  Fly   634 AGELITTATWMREQVLSHPDYKQDSVVSERINYDLLKRIQGIQEGKQVEPALLGQDYHSKT 694
            .||:.|.|.|.|..|.|||.||.||.|::.|.|||||::..|..|:.....||| .|.|||
 Worm   571 TGEINTLAHWTRGFVQSHPAYKHDSDVNDNIVYDLLKKMDAISNGEDHCEKLLG-CYRSKT 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GclcNP_001285001.1 GCS 232..675 CDD:281119 216/443 (49%)
gcs-1NP_495927.2 GCS 241..612 CDD:281119 216/445 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160163611
Domainoid 1 1.000 327 1.000 Domainoid score I634
eggNOG 1 0.900 - - E1_KOG3754
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1148
Inparanoid 1 1.050 569 1.000 Inparanoid score I580
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54052
OrthoDB 1 1.010 - - D126317at33208
OrthoFinder 1 1.000 - - FOG0005562
OrthoInspector 1 1.000 - - oto20120
orthoMCL 1 0.900 - - OOG6_102076
Panther 1 1.100 - - LDO PTHR11164
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R527
SonicParanoid 1 1.000 - - X3981
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.840

Return to query results.
Submit another query.