DRSC/TRiP Functional Genomics Resources

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Protein Alignment pins and Ttc29

DIOPT Version :10

Sequence 1:NP_524999.2 Gene:pins / 53569 FlyBaseID:FBgn0040080 Length:658 Species:Drosophila melanogaster
Sequence 2:XP_063133962.1 Gene:Ttc29 / 291944 RGDID:1589777 Length:473 Species:Rattus norvegicus


Alignment Length:389 Identity:85/389 - (21%)
Similarity:146/389 - (37%) Gaps:126/389 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 SMCLELALEG---------------ERLCKAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNA 90
            |:|:::..:|               ::|.:|...|:  .|:   :|...||..      .:|.|.
  Rat    67 SICVDMLRDGFHKSFTELFSLMEQWDKLREAAQARS--LFW---LQRPLEDQP------DKLDNF 120

  Fly    91 YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA-----AICC------ 144
            |.|              ||.|::     .|.|            |.::|.     |:.|      
  Rat   121 YHY--------------LTKAEA-----AERK------------GYYEEVYNNLYALACYFDNSE 154

  Fly   145 ---------ERHLTLARQL----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 196
                     ||...:|:.:    |.:.:|..|  ::|.:|..:|:                 |.:
  Rat   155 DKWVRNHFYERCFKIAQLIKVDGGKKEAEAEA--HMGLLYEEEGE-----------------LLK 200

  Fly   197 AVEFYQENLKLMRDLGDRGAQGR-----ACGNLGNTYYLLG-------DFQAAIEHHQERLRIAR 249
            |.|.|:...:|.:....:.|.|:     ||.:|..||.||.       |::.||:...:...|||
  Rat   201 AAEHYEAFHELTQGRLWKDATGQFLNLIACESLVRTYRLLSDRMLQNRDYKQAIKILIKASEIAR 265

  Fly   250 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL--- 311
            |..||:.|..|:..||.:|:..|::|.|.....|...::..|.:.       .|||..|..:   
  Rat   266 EGNDRSMEGEASYYLGLAHLASGEYETALSVLDRYSEISTSLDDE-------LSLGRAYEAMAKV 323

  Fly   312 ----HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAKEL 371
                .|...||:|..:.:.||:.....:...:||..||:.::..|.:.:|..|.:|....|.|:
  Rat   324 LQSQGEMTEAIKYLEKFVVIARNNFKSLDVIQACTMLGDIYNEKGQYNKASDYFQQAFSTAMEV 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pinsNP_524999.2 TPR 50..261 CDD:440225 54/261 (21%)
TPR repeat 83..109 CDD:276809 4/25 (16%)
TPR repeat 120..150 CDD:276809 8/49 (16%)
TPR 162..>373 CDD:440225 57/229 (25%)
TPR repeat 162..199 CDD:276809 6/36 (17%)
TPR repeat 219..246 CDD:276809 10/38 (26%)
TPR repeat 251..291 CDD:276809 11/39 (28%)
TPR repeat 296..326 CDD:276809 8/36 (22%)
TPR repeat 338..366 CDD:276809 8/27 (30%)
GoLoco 468..488 CDD:460481
GoLoco 552..573 CDD:460481
GoLoco 613..633 CDD:460481
Ttc29XP_063133962.1 None
Blue background indicates that the domain is not in the aligned region.

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