DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment larp and LARP1b

DIOPT Version :10

Sequence 1:NP_733244.5 Gene:larp / 53567 FlyBaseID:FBgn0261618 Length:1673 Species:Drosophila melanogaster
Sequence 2:NP_201411.2 Gene:LARP1b / 836742 AraportID:AT5G66100 Length:453 Species:Arabidopsis thaliana


Alignment Length:437 Identity:104/437 - (23%)
Similarity:174/437 - (39%) Gaps:99/437 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   436 TKKQQSAKTAAAVAASSNTTSSE--------VATESNVAGTTSSSNSNPSSSTTTTNTTTNSQAT 492
            |....:|.:|:..:..|:.:.|.        :.::|:...|.|.|..:|.|:.:.:..|.|:   
plant     4 TTASSAANSASRFSIDSSISRSRHGDSSPWLLPSDSHDHPTLSLSQDDPFSAPSVSPPTGNN--- 65

  Fly   493 TAPVASTSHDAKAQRDAEPAANSAAGTTGTAAGPALTKKIPKHKWRPLPIDLAKSSRPKPIGGRP 557
                 |:.:| .|.:...|..|..:..:.:..||.:.   ....|..|.:. |:||..|......
plant    66 -----SSDYD-NADKKPPPVWNMPSSNSSSDVGPVMG---AAESWPALSLS-ARSSSIKSPSLDA 120

  Fly   558 NRRFSDDIADQRRPPRVYHDRQPGA-GGAGV------ESRHPHAGRHPYGSRPATATSERVDSWR 615
            ::.|.|..:....||:...:....| .|:.|      .|...::.|.|:.....|::|.      
plant   121 SKPFPDGSSSSIPPPQATSNTSTNANAGSSVSATSSENSAVNNSQRKPFRRNNNTSSSS------ 179

  Fly   616 SSSSTTTAA----FDEQRSGAAGGAGAAGT--------GVGSATRGPRRY---RTPYRGGRQGRG 665
            :||:.:.||    .|:..|...||:..:|.        ...|..||...:   |..|..|.|  .
plant   180 TSSNVSNAAPLNTRDQNHSQRGGGSFGSGNFRNSQRNRNSSSYPRGEGLHHGNRRNYEHGNQ--S 242

  Fly   666 GFSRQG---------PGRPTYRI-PRHLLASGEY----ANYLPADAAGA-------DSQSSYVLM 709
            |||.:.         |.|....| |:.|:....:    |.|:.|...|:       ...:.:|.|
plant   243 GFSHRNYSGRDMHLQPQRGVGMIRPQMLMGPPSFPASSAQYMAAPQLGSYGGPIIYPDYAQHVFM 307

  Fly   710 GTH-----------------YFGNVPAAYIELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMD 757
             .|                 ||.|..|.        :...|..|||||||.|||:.|..||.:|:
plant   308 -PHPSPDPMGLVGPFPLQPMYFRNFDAI--------LYNKILTQVEYYFSADNLSRDEHLRDQMN 363

  Fly   758 PEGYIPVTLIASFHRVLALTTDVAVIVNAIKESDKLELFEGYKVRTK 804
            .||::||.:||:|.|:..||.::..|:.|::.|:.:|: :|..:|.:
plant   364 DEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVEI-QGETLRRR 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larpNP_733244.5 LARP_1_2 730..803 CDD:153403 30/72 (42%)
DM15 1341..1382 CDD:128927
DM15 1383..1421 CDD:128927
LARP1bNP_201411.2 LAM 336..409 CDD:153396 31/73 (42%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.