Sequence 1: | NP_001247347.1 | Gene: | larp / 53567 | FlyBaseID: | FBgn0261618 | Length: | 1673 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_566004.1 | Gene: | LARP6b / 819002 | AraportID: | AT2G43970 | Length: | 545 | Species: | Arabidopsis thaliana |
Alignment Length: | 637 | Identity: | 128/637 - (20%) |
---|---|---|---|
Similarity: | 207/637 - (32%) | Gaps: | 236/637 - (37%) |
- Green bases have known domain annotations that are detailed below.
Fly 468 TTSSSNSNPSSSTTTTNTTTNSQATTAPVASTSHDAKAQRDAEPAANSAAGTTGTAAGPALTKKI 532
Fly 533 PKHKWRPLPIDLAKSSRPKPIGGRPNRRFSDDIADQRRPP----RVYHDRQP-GAGGAG------ 586
Fly 587 ----VESRHPHAGRHPYGSRPATATSERVDSWRSSSSTTTAAFDEQRSGAAGGAGAAGTGVGSAT 647
Fly 648 RGPRRYRTPYR--GGRQGRGGF-SRQGPGRPTYRIPRHLLASGEYANYLPADAAGADSQSSYVLM 709
Fly 710 GTHYFGNVPAAYIELDA------NSIKEAIKKQVEYYFSVDNLTGDFFLRRKM--DPEGYIPVTL 766
Fly 767 IASFHRVLALTTDVAVIVNAIKESDKLELFE-GYKVRTKTTPTTWPITEVPEVNEGEPKAIGTLE 830
Fly 831 Q-----EQLEQNDGQEKLEEQTEADSPPPILTSAMATKPLNSIPP-------PPMPRNPQNLVPK 883
Fly 884 MLQDKQQSRSSTIAALNSVNA-----ISALTQQVEGGAAELAGHLSGLAESVKPKSTSTPDKRNA 943
Fly 944 ASAGNGAGSAAALVAEPEGIWKEVKRRSKTNAIKENATTPPQQ-----------------QQPPL 991
Fly 992 SQTLNNN----------------------NDNVKTNNTSSKSKSSSNNAPSN 1021 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
larp | NP_001247347.1 | LARP_1_2 | 730..803 | CDD:153403 | 29/75 (39%) |
DM15 | 1341..1382 | CDD:128927 | |||
DM15 | 1383..1421 | CDD:128927 | |||
LARP6b | NP_566004.1 | LARP_6 | 194..270 | CDD:153402 | 30/76 (39%) |
RRM_La_like_plant | 285..380 | CDD:240734 | 19/116 (16%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG5193 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |