DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment larp and larp6a

DIOPT Version :10

Sequence 1:NP_733244.5 Gene:larp / 53567 FlyBaseID:FBgn0261618 Length:1673 Species:Drosophila melanogaster
Sequence 2:NP_956197.1 Gene:larp6a / 334471 ZFINID:ZDB-GENE-030131-6403 Length:485 Species:Danio rerio


Alignment Length:453 Identity:103/453 - (22%)
Similarity:173/453 - (38%) Gaps:121/453 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   723 ELDANSIK----EAIKK---QVEYYFSVDNLTGDFFL-----RRKMDPEGYIPVTLIASFHRVLA 775
            ||:..|.:    |.|:|   |:|||.|.:||..|.||     |.|:   |::.|.|:.||.:|..
Zfish    65 ELEEESWQPPDPELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKL---GFVSVKLLTSFKKVKH 126

  Fly   776 LTTDVAVIVNAIKESDKLEL-FEGYKVRTKTTPTTWPITEVPE----VNEGE--PK---AIGTLE 830
            ||.|......|::.|:.||| .||.|||.::|...:....:|.    ::|.:  |:   |:|.  
Zfish   127 LTRDWRTTAYALRHSNLLELNDEGRKVRRRSTVPVFASESLPSRMLLLSELKRWPELGIALGG-- 189

  Fly   831 QEQLEQNDG-----QEKLEEQTEADSPPPILTSAMAT-KPLNSI----PPPPMPRNPQNLVPKML 885
                :.|:|     ||:|.|         :|..|... .|:.|:    |...:|.:.:.|..:..
Zfish   190 ----DSNNGSGPTQQERLME---------LLLKAFGNYGPIASVRVLKPGKDLPADLKKLSGRYS 241

  Fly   886 QDKQQSRSSTIAALNSVNAISALTQQV--EGGAAELAGHLSGLAESVKPKSTSTPDKRNAASAGN 948
            |  ..:....|.....|.|.....:.|  |||.....| |..:....||.....|..|       
Zfish   242 Q--LGTEECAIVEFEEVEAAMKAHEAVGGEGGNRGPLG-LKVVLIGTKPPKKKVPKDR------- 296

  Fly   949 GAGSAAALVAEPEGIWKEVKRRSKTNAIKE-------NATTPPQQQQPPLSQTLNNNNDNVKTNN 1006
                     ...|||....|.||..:.::|       :|.:..:.:..|.|..|           
Zfish   297 ---------PRDEGIGGMRKSRSLNSRVRELQYHGDDSAASSSETESNPTSPRL----------- 341

  Fly  1007 TSSKSKSSSNNAPSNASSSATVCVTTNNAS-----SATKATTKTTTTS----------------- 1049
             :.||:|.:..:|::|..:....|.:..:|     .|:..|.:.|..|                 
Zfish   342 -ARKSRSCNKLSPTSAGPNHLSPVVSPRSSPWSSPRASPCTQRKTHPSGKSPLASEGRLSPEPGR 405

  Fly  1050 -TATTTTNNNIKSGNAAYSKTHSKSSSKTAAPPSAQCHAEKEELDFQFDEELMDPLPPGTGRI 1111
             .|..::::::....:.:.:...:.:|:.::|..:...|.|        .:..|.||||..|:
Zfish   406 RWADYSSDSSLTPSGSPWVQRRKQVASQESSPVGSPMLARK--------IQNADGLPPGVVRL 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larpNP_733244.5 LARP_1_2 730..803 CDD:153403 33/85 (39%)
DM15 1341..1382 CDD:128927
DM15 1383..1421 CDD:128927
larp6aNP_956197.1 LARP_6 79..155 CDD:153402 32/78 (41%)
RRM_LARP6 170..284 CDD:409731 27/131 (21%)
SUZ-C 441..473 CDD:463745 8/28 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.