Protein Alignment larp and larp6a

DIOPT Version :9

• Sequence 1: NP_001247347.1
• Gene: larp / 53567
• FlyBaseID: FBgn0261618
• Length: 1673
• Species: Drosophila melanogaster
• Sequence 2: NP_956197.1
• Gene: larp6a / 334471
• ZFINID: ZDB-GENE-030131-6403
• Length: 485
• Species: Danio rerio
• Alignment Length: 453
• Identity: 103/453 - (22%)
• Similarity: 173/453 - (38%)
• Gaps: 121/453 - (26%)

  Fly   723 ELDANSIK----EAIKK---QVEYYFSVDNLTGDFFL-----RRKMDPEGYIPVTLIASFHRVLA 775
            ||:..|.:    |.|:|   |:|||.|.:||..|.||     |.|:   |::.|.|:.||.:|..
Zfish    65 ELEEESWQPPDPELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKL---GFVSVKLLTSFKKVKH 126

  Fly   776 LTTDVAVIVNAIKESDKLEL-FEGYKVRTKTTPTTWPITEVPE----VNEGE--PK---AIGTLE 830
            ||.|......|::.|:.||| .||.|||.::|...:....:|.    ::|.:  |:   |:|.
Zfish   127 LTRDWRTTAYALRHSNLLELNDEGRKVRRRSTVPVFASESLPSRMLLLSELKRWPELGIALGG-- 189

  Fly   831 QEQLEQNDG-----QEKLEEQTEADSPPPILTSAMAT-KPLNSI----PPPPMPRNPQNLVPKML 885
                :.|:|     ||:|.|         :|..|... .|:.|:    |...:|.:.:.|..:..
Zfish   190 ----DSNNGSGPTQQERLME---------LLLKAFGNYGPIASVRVLKPGKDLPADLKKLSGRYS 241

  Fly   886 QDKQQSRSSTIAALNSVNAISALTQQV--EGGAAELAGHLSGLAESVKPKSTSTPDKRNAASAGN 948
            |  ..:....|.....|.|.....:.|  |||.....| |..:....||.....|..|
Zfish   242 Q--LGTEECAIVEFEEVEAAMKAHEAVGGEGGNRGPLG-LKVVLIGTKPPKKKVPKDR------- 296

  Fly   949 GAGSAAALVAEPEGIWKEVKRRSKTNAIKE-------NATTPPQQQQPPLSQTLNNNNDNVKTNN 1006
                     ...|||....|.||..:.::|       :|.:..:.:..|.|..|
Zfish   297 ---------PRDEGIGGMRKSRSLNSRVRELQYHGDDSAASSSETESNPTSPRL----------- 341

  Fly  1007 TSSKSKSSSNNAPSNASSSATVCVTTNNAS-----SATKATTKTTTTS----------------- 1049
             :.||:|.:..:|::|..:....|.:..:|     .|:..|.:.|..|
Zfish   342 -ARKSRSCNKLSPTSAGPNHLSPVVSPRSSPWSSPRASPCTQRKTHPSGKSPLASEGRLSPEPGR 405

  Fly  1050 -TATTTTNNNIKSGNAAYSKTHSKSSSKTAAPPSAQCHAEKEELDFQFDEELMDPLPPGTGRI 1111
             .|..::::::....:.:.:...:.:|:.::|..:...|.|        .:..|.||||..|:
Zfish   406 RWADYSSDSSLTPSGSPWVQRRKQVASQESSPVGSPMLARK--------IQNADGLPPGVVRL 460

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
larp	NP_001247347.1	LARP_1_2	730..803	CDD:153403	33/85 (39%)
		DM15	1341..1382	CDD:128927
		DM15	1383..1421	CDD:128927
larp6a	NP_956197.1	LARP_6	79..155	CDD:153402	32/78 (41%)
		RRM_LARP6	200..284	CDD:240735	21/95 (22%)
		SUZ-C	457..472	CDD:289656	1/4 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170586336
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.840