DRSC/TRiP Functional Genomics Resources

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Protein Alignment larp and Larp1b

DIOPT Version :9

Sequence 1:NP_001247347.1 Gene:larp / 53567 FlyBaseID:FBgn0261618 Length:1673 Species:Drosophila melanogaster
Sequence 2:XP_038958171.1 Gene:Larp1b / 310348 RGDID:1307509 Length:537 Species:Rattus norvegicus


Alignment Length:705 Identity:180/705 - (25%)
Similarity:248/705 - (35%) Gaps:234/705 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 PRDQQPAGGRGDGQKPQQAGGRRV--PGSSDTERKSVRPRAPRGGSPRKSAAGAAGAAGSNAGAV 201
            ||:..||.. ||......|..||.  |...:.|.|..|       ..|.:||.:|||.|..:.|:
  Rat    12 PREDPPAVA-GDRDALLAAASRRAEQPAPGEREGKEAR-------EERAAAATSAGARGEPSPAL 68

  Fly   202 -------SSAVPGGP-KVHKDRKDTSPSASIEGAGSSGNEAKSADGDQQAGEKGAAGAAPPPKRF 258
                   .:|||..| .:|...|..:|      .|..|.||                ..|||...
  Rat    69 VLGHSVPQAAVPVRPLALHLAHKARAP------GGPFGGEA----------------PPPPPPPP 111

  Fly   259 IAAPPPKVNAWKISAKQSGSPKAGTSPLDKRVLQPKAQQQQQQTKQTASQNNNAQNTASNKKTQQ 323
            ...|||...|.:...:......|.....||....||....                   .||..|
  Rat   112 PPPPPPPPPAPRDPPEDVREDPAAAGLEDKPPPLPKGNPW-------------------TKKLPQ 157

  Fly   324 QQQPQQGATTTTQTTTAAAAAATAAAAATAATTSAAAATSSAAAVPAATTETATTTTVDASQADA 388
            ...|                  ........|..|..|..||...:.|.                 
  Rat   158 HLSP------------------VGTGVPPPAQDSPEAELSSPKIIKAG----------------- 187

  Fly   389 LAKVVVKDKKKVNQKASDFSNVGDWPT---LIGGTSGSGKATSNEPKRNPTKKQQSAKTAAAVAA 450
                  |.|.|.:.||||||::.:|||   |:  .:||....|...|:...:|::..|    :..
  Rat   188 ------KLKTKKSNKASDFSDMANWPTPGELV--NTGSQSVISQGNKKPQIRKEKEEK----IEK 240

  Fly   451 SSNTTSSEVATESNVAGTTSSSNSNPSSSTTTTNTTTNSQA-TTAPVASTSHDAKAQRDAEPAAN 514
            .||:.|.|                             |.:| ...|:.:.|.| :||..::    
  Rat   241 RSNSESKE-----------------------------NREAKLDGPIENVSED-EAQSSSQ---- 271

  Fly   515 SAAGTTGTAAGPALTKKIPKHKWRPLPIDLAKSSRPKPIGGRPNRRFSDDIADQRRPPRVYHDRQ 579
                          .|:..||||.||.:|          ..||:        .|.||        
  Rat   272 --------------RKRANKHKWVPLHLD----------DVRPD--------SQERP-------- 296

  Fly   580 PGAGGAGVESR-HPHAGRHPYGSRPATATSERVDSWRSSSSTTTAAFDEQRSGAAGGAGAAGTGV 643
                |:...|| .|.|.:..:.:|.:...|.|.|..:....      ||..|..:.|    ||..
  Rat   297 ----GSRNSSRCQPEANKPAHNNRKSDTRSWRRDREKRDDQ------DEVSSVRSEG----GTIR 347

  Fly   644 GSATRGPRRYRTPYRGGRQGRG--------GFSRQGPGRPTYR-IPRHLLASGEYANYLPADAAG 699
            || |||..|.|.  ||..:|||        .:..:.||..|.: .|..|..|..|          
  Rat   348 GS-TRGRGRGRG--RGRGRGRGNPRLNFDYSYGYREPGERTEQPFPTELNTSMMY---------- 399

  Fly   700 ADSQSSYVLMGTHYFGNVPAAYIELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPV 764
                        :|..........::...:||.||:|:|||||::||..|||||||||.:|::|:
  Rat   400 ------------YYDDGTGVQVYPVEETLLKEYIKRQIEYYFSIENLERDFFLRRKMDEQGFLPI 452

  Fly   765 TLIASFHRVLALTTDVAVIVNAIKESDKLELFEGYKVRTKTTPTTWPITEVPEVN 819
            :|||.||||.||||::.:|:.|:|:|.::|:.: .|:|.|..|..|||...|..|
  Rat   453 SLIAGFHRVQALTTNLNLILEALKDSTEVEIVD-EKMRKKIEPEKWPIPGPPPRN 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larpNP_001247347.1 LARP_1_2 730..803 CDD:153403 40/72 (56%)
DM15 1341..1382 CDD:128927
DM15 1383..1421 CDD:128927
Larp1bXP_038958171.1 LARP_2 418..490 CDD:153407 40/72 (56%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345245
Domainoid 1 1.000 89 1.000 Domainoid score I7679
eggNOG 1 0.900 - - E1_COG5193
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D258488at2759
OrthoFinder 1 1.000 - - FOG0001290
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_103868
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.740

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