| Sequence 1: | NP_001247347.1 | Gene: | larp / 53567 | FlyBaseID: | FBgn0261618 | Length: | 1673 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001271452.1 | Gene: | Larp4 / 207214 | MGIID: | 2443114 | Length: | 720 | Species: | Mus musculus |
| Alignment Length: | 532 | Identity: | 110/532 - (20%) |
|---|---|---|---|
| Similarity: | 188/532 - (35%) | Gaps: | 161/532 - (30%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 683 LLASGEYANYLPADAAGADSQSSYVLMGTHYFGNVPAAYIELDANSIKEAIKKQVEYYFSVDNLT 747
Fly 748 GDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVNAIKESDKLELFE-GYKVR--------- 802
Fly 803 TKTTPTTWPITEVPEV--NEGEPKAIG-----------TLEQEQLEQNDGQEK---LEEQTEADS 851
Fly 852 PPPILT------------------SAMATKPLNSIPPPPMP------RNPQ-----NLVPKMLQD 887
Fly 888 KQQSRSSTIAAL-----------NSVNAISALTQQVEGGAAELAGHLSGLAESVKPKSTSTPDKR 941
Fly 942 NAASAGNGAGSAAALVAEPEGIWKEVKRRSKTNAIKE--NATTPPQQQQ------PPLSQTLNN- 997
Fly 998 ----------------NNDNV-KTNNTSSKSKSS-------SNNAPSNASSSATV---CVTTNNA 1035
Fly 1036 SSATKATTKTTTTSTATTTTNNNIKSGNAAYSKTHSKSSSKTAAP----PSAQCHAEKEELDF-- 1094
Fly 1095 QFDEELMDPLPP 1106 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| larp | NP_001247347.1 | LARP_1_2 | 730..803 | CDD:153403 | 26/82 (32%) |
| DM15 | 1341..1382 | CDD:128927 | |||
| DM15 | 1383..1421 | CDD:128927 | |||
| Larp4 | NP_001271452.1 | Interaction with PABPC1. /evidence=ECO:0000250|UniProtKB:Q71RC2 | 13..22 | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 22..56 | ||||
| Interaction with the poly-A tract of mRNA. /evidence=ECO:0000250|UniProtKB:Q71RC2 | 108..300 | 48/214 (22%) | |||
| LARP_4 | 117..191 | CDD:153404 | 25/73 (34%) | ||
| RRM_LARP4 | 196..272 | CDD:241151 | 17/79 (22%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 364..399 | 6/47 (13%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 438..471 | 2/32 (6%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 530..563 | 10/32 (31%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 577..602 | ||||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 616..720 | ||||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_COG5193 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 2 | 1.810 | |||||