DRSC/TRiP Functional Genomics Resources

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Protein Alignment larp and LARP4

DIOPT Version :9

Sequence 1:NP_001247347.1 Gene:larp / 53567 FlyBaseID:FBgn0261618 Length:1673 Species:Drosophila melanogaster
Sequence 2:XP_011536131.1 Gene:LARP4 / 113251 HGNCID:24320 Length:732 Species:Homo sapiens


Alignment Length:829 Identity:169/829 - (20%)
Similarity:261/829 - (31%) Gaps:286/829 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   539 PLPIDLAKSSRPKPIGGRPNRRFSDDIADQRRPPRVYHDRQPGAGGA-----GVESR-HPHA--- 594
            |.|..:|.    |..|..||.:...:||             ||...|     |.||. |..|   
Human    11 PTPQQVAS----KGTGLNPNAKVWQEIA-------------PGNTDATPVTHGTESSWHEIAATS 58

  Fly   595 GRHPYGSRPATATSERV----DSWRSSSSTTTAAFDEQRSGAAGGAGAAGTGVGSATRGPRRYRT 655
            |.||.|:   ...||.:    :...|||..||               ...||:..:|.|      
Human    59 GAHPEGN---AELSEDICKEYEVMYSSSCETT---------------RNTTGIEESTDG------ 99

  Fly   656 PYRGGRQGRGGFSRQGPGRPTYRIPRHLLASGEYANYLPADAAGADSQSSYVLMGTHYFGNVPAA 720
                                       ::...|..:|...|.:| :|.|:               
Human   100 ---------------------------MILGPEDLSYQIYDVSG-ESNSA--------------- 121

  Fly   721 YIELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVN 785
               :....:||.:|||:|:.||.:||:.|.:|..:||.:.:||:..:|:...:..||||..:|:.
Human   122 ---VSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILE 183

  Fly   786 AIKESDKLELFE-GYKVR---------TKTTPTTWPITEVPEVNEGE--PKAIG----------- 827
            .::.|..:::.| |.|||         .:..|.|.||.||..:.:.|  ||.|.           
Human   184 VLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYI 248

  Fly   828 TLEQEQLEQNDGQEK---LEEQTEADSPPPILTSAMATKPL----------NSIPPPPMPRNPQN 879
            |.:.:    .|.|:.   |.|:.:.....||:....|....          :||...|:....|.
Human   249 TFQSD----TDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYRLMDSSIYSHPIQTQAQY 309

  Fly   880 LVPKMLQDKQQSRSSTIAALNSVNAISALTQQVEGGAAELAGHLSGLAESVKPKSTS---TPDKR 941
            ..|..:|.....                              |......|:.|:|.|   ||...
Human   310 ASPVFMQPVYNP------------------------------HQQYSVYSIVPQSWSPNPTPYFE 344

  Fly   942 NA------ASAGNGAGSAAALVAEPEGIWKEVKRRSKTNAIKENATTPPQQQQPPLSQTLNNNND 1000
            ..      .|..||..|..:.               ||||...|...|.|:.:.......:..::
Human   345 TPLAPFPNGSFVNGFNSPGSY---------------KTNAAAMNMGRPFQKNRVKPQFRSSGGSE 394

  Fly  1001 NVKTNNTS----SKSKSSSNNAPSNASSSATVCVTTNNASSATKATTKTTTTSTATTTTNNNIKS 1061
            :....:.|    ..::.||.|.|:...:..   ||.:.     :.|.....|||.....|.:...
Human   395 HSTEGSVSLGDGQLNRYSSRNFPAERHNPT---VTGHQ-----EQTYLQKETSTLQVEQNGDYGR 451

  Fly  1062 GNAA------------YSKTHSKSSSKTAAPPSAQCHAEKEELDFQFDEELMDPLPPGTGRINN- 1113
            |...            .|:.|..::...|..|.           |........|||..:.|:.. 
Human   452 GRRTLFRGRRRREDDRISRPHPSTAESKAPTPK-----------FDLLASNFPPLPGSSSRMPGE 505

  Fly  1114 -FTEN-FSDDDESDYEFADRDINKLLIVAQVGRAPKHEGYDRTADFTSRTKITQDLENIINDGLV 1176
             ..|| .||..:..|:  ::|..:|.|...|..       |...:.||..::     |:......
Human   506 LVLENRMSDVVKGVYK--EKDNEELTISCPVPA-------DEQTECTSAQQL-----NMSTSSPC 556

  Fly  1177 NYEEDLWTTTNVVADYKTVNVISQADFEKLAGGRNKSVLPPQVVPPPPPFEEDLDETLVGDTTLN 1241
            ..|....:||....|     :|..:..:|  .|.|::.:|   |.||                  
Human   557 AAELTALSTTQQEKD-----LIEDSSVQK--DGLNQTTIP---VSPP------------------ 593

  Fly  1242 STLNNTLKSRRARFYAAPNSHSIDPRT------PRKRKLRHTA-NPPVE 1283
                :|.|..||. .|:|.:::|:..|      |||....... .||.|
Human   594 ----STTKPSRAS-TASPCNNNINAATAVALQEPRKLSYAEVCQKPPKE 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larpNP_001247347.1 LARP_1_2 730..803 CDD:153403 28/82 (34%)
DM15 1341..1382 CDD:128927
DM15 1383..1421 CDD:128927
LARP4XP_011536131.1 LARP_4 128..202 CDD:153404 27/73 (37%)
RRM_LARP4 207..283 CDD:241151 18/79 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5193
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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