Sequence 1: | NP_001247347.1 | Gene: | larp / 53567 | FlyBaseID: | FBgn0261618 | Length: | 1673 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_011536131.1 | Gene: | LARP4 / 113251 | HGNCID: | 24320 | Length: | 732 | Species: | Homo sapiens |
Alignment Length: | 829 | Identity: | 169/829 - (20%) |
---|---|---|---|
Similarity: | 261/829 - (31%) | Gaps: | 286/829 - (34%) |
- Green bases have known domain annotations that are detailed below.
Fly 539 PLPIDLAKSSRPKPIGGRPNRRFSDDIADQRRPPRVYHDRQPGAGGA-----GVESR-HPHA--- 594
Fly 595 GRHPYGSRPATATSERV----DSWRSSSSTTTAAFDEQRSGAAGGAGAAGTGVGSATRGPRRYRT 655
Fly 656 PYRGGRQGRGGFSRQGPGRPTYRIPRHLLASGEYANYLPADAAGADSQSSYVLMGTHYFGNVPAA 720
Fly 721 YIELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVN 785
Fly 786 AIKESDKLELFE-GYKVR---------TKTTPTTWPITEVPEVNEGE--PKAIG----------- 827
Fly 828 TLEQEQLEQNDGQEK---LEEQTEADSPPPILTSAMATKPL----------NSIPPPPMPRNPQN 879
Fly 880 LVPKMLQDKQQSRSSTIAALNSVNAISALTQQVEGGAAELAGHLSGLAESVKPKSTS---TPDKR 941
Fly 942 NA------ASAGNGAGSAAALVAEPEGIWKEVKRRSKTNAIKENATTPPQQQQPPLSQTLNNNND 1000
Fly 1001 NVKTNNTS----SKSKSSSNNAPSNASSSATVCVTTNNASSATKATTKTTTTSTATTTTNNNIKS 1061
Fly 1062 GNAA------------YSKTHSKSSSKTAAPPSAQCHAEKEELDFQFDEELMDPLPPGTGRINN- 1113
Fly 1114 -FTEN-FSDDDESDYEFADRDINKLLIVAQVGRAPKHEGYDRTADFTSRTKITQDLENIINDGLV 1176
Fly 1177 NYEEDLWTTTNVVADYKTVNVISQADFEKLAGGRNKSVLPPQVVPPPPPFEEDLDETLVGDTTLN 1241
Fly 1242 STLNNTLKSRRARFYAAPNSHSIDPRT------PRKRKLRHTA-NPPVE 1283 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
larp | NP_001247347.1 | LARP_1_2 | 730..803 | CDD:153403 | 28/82 (34%) |
DM15 | 1341..1382 | CDD:128927 | |||
DM15 | 1383..1421 | CDD:128927 | |||
LARP4 | XP_011536131.1 | LARP_4 | 128..202 | CDD:153404 | 27/73 (37%) |
RRM_LARP4 | 207..283 | CDD:241151 | 18/79 (23%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG5193 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |