DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kat60 and SKD1

DIOPT Version :10

Sequence 1:NP_001262276.1 Gene:Kat60 / 53566 FlyBaseID:FBgn0040208 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_180328.1 Gene:SKD1 / 817306 AraportID:AT2G27600 Length:435 Species:Arabidopsis thaliana


Alignment Length:373 Identity:154/373 - (41%)
Similarity:222/373 - (59%) Gaps:50/373 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   267 DDDSTAAGNNGGAA---------GDGENGDPQAAQEEERKFQPNNHIEAELVDILERDILQKDPK 322
            |:..:..|:||.||         .|||.|.......|:.|.:..          |...|:::.|.
plant    74 DEGGSGPGSNGDAAVATRPKTKPKDGEGGGKDGEDPEQSKLRAG----------LNSAIVREKPN 128

  Fly   323 VRWSDIADLHDAKRLLEEAVVLPMLMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTF 387
            ::|||:|.|..||:.|:|||:||:..|.:|.|.||||:..|:.|||||||:.||||||||..:||
plant   129 IKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTF 193

  Fly   388 FNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLV 452
            |:|||:.|.||:.|||||:|..||||||..|||.||:|||||||..||..:|.|||||:|:||||
plant   194 FSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLV 258

  Fly   453 QMDGVGGGEEQAKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPSDEGREALLKINLREVKVD-D 516
            ||.|||..:|:   |:||||||.|:.:|:|:|||.:||||||||..:.|:.:.|::|.:...: .
plant   259 QMQGVGHNDEK---VLVLAATNTPYALDQAIRRRFDKRIYIPLPEAKARQHMFKVHLGDTPHNLT 320

  Fly   517 SVDLTYVANELKGYSGADITNVCREASMMSMRRKI---------------------AGLTPEQIR 560
            ..|..|:..:.:|:||:|: :||.:..:....||.                     .|.....::
plant   321 EPDFEYLGQKTEGFSGSDV-SVCVKDVLFEPVRKTQDAMFFFKSPDGTWMPCGPRHPGAIQTTMQ 384

  Fly   561 QLATEE-----VDLPVSNKDFNEAMSRCNKSVSRADLDKYEKWMREFG 603
            .|||:.     :..|::..||.:.::|...:||::|||.:|::.:|||
plant   385 DLATKGLAEKIIPPPITRTDFEKVLARQRPTVSKSDLDVHERFTQEFG 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kat60NP_001262276.1 Kp60-NTD 62..129 CDD:439297
PHA03291 <167..>253 CDD:223033
SpoVK 219..566 CDD:440232 141/329 (43%)
RecA-like_KTNA1 327..493 CDD:410930 102/165 (62%)
Vps4_C <570..603 CDD:462762 11/32 (34%)
SKD1NP_180328.1 cell_div_CdvC 7..431 CDD:468935 151/370 (41%)
RecA-like_VPS4 126..296 CDD:410929 105/172 (61%)
Blue background indicates that the domain is not in the aligned region.

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