DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kat60 and psmc1b

DIOPT Version :9

Sequence 1:NP_001262276.1 Gene:Kat60 / 53566 FlyBaseID:FBgn0040208 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001002091.1 Gene:psmc1b / 415181 ZFINID:ZDB-GENE-040625-69 Length:440 Species:Danio rerio


Alignment Length:355 Identity:112/355 - (31%)
Similarity:181/355 - (50%) Gaps:65/355 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 GRKLSTSNTNEARDDD----STAAGNNGGAAGDGENGDPQAAQEEERKFQPN-----NHIEAELV 309
            |..:|.....|..||:    ||:.|:        |:.....:..::...:|.     ||....::
Zfish   104 GTPMSVGTLEEIIDDNHAIVSTSVGS--------EHYVSILSFVDKDLLEPGCSVLLNHKVHAVI 160

  Fly   310 DILERDI--------LQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFK--GIRRPWKGVLM 364
            .:|..|.        ::|.|:..::||..|.:..:.::|:|.||:..|:|::  ||:.| |||::
Zfish   161 GVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPP-KGVIL 224

  Fly   365 VGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDS 429
            .|.||||||:||||||.:...||..|..:.|..||.|:..|:||.||.:|..:|||.:||||||:
Zfish   225 YGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 289

  Fly   430 LCSRR-----GSESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEALRR--RL 487
            :.::|     |.|.|   .:|...|||.|:||.....:    |.|:.|||....:|.||.|  |:
Zfish   290 IGTKRYDSNSGGERE---IQRTMLELLNQLDGFDSRGD----VKVIMATNRIETLDPALIRPGRI 347

  Fly   488 EKRIYIPLPSDEGREALLKINLREVKVDDSV---DLTYVANELKGYSGADITNVCREASMMSMRR 549
            :::|..|||.::.:..:.:|:...:.|.:.|   ||....::|   |||||..:|.||.:|::| 
Zfish   348 DRKIEFPLPDEKTKRRIFQIHTSRMTVAEDVSLDDLILAKDDL---SGADIKAICTEAGLMALR- 408

  Fly   550 KIAGLTPEQIRQLATEEVDLPVSNKDFNEA 579
                            |..:.|:|:||.::
Zfish   409 ----------------ERRMKVTNEDFKKS 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kat60NP_001262276.1 HCV_NS5a_C <163..243 CDD:289693
P-loop_NTPase 325..>381 CDD:304359 27/57 (47%)
AAA 358..496 CDD:214640 62/144 (43%)
AAA 362..495 CDD:278434 58/139 (42%)
Vps4_C <570..603 CDD:286426 4/10 (40%)
psmc1bNP_001002091.1 PTZ00361 1..440 CDD:185575 112/355 (32%)
Prot_ATP_ID_OB 108..>176 CDD:293059 13/75 (17%)
AAA 222..355 CDD:278434 58/139 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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