DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kat60 and psmc1b

DIOPT Version :10

Sequence 1:NP_001262276.1 Gene:Kat60 / 53566 FlyBaseID:FBgn0040208 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001002091.1 Gene:psmc1b / 415181 ZFINID:ZDB-GENE-040625-69 Length:440 Species:Danio rerio


Alignment Length:355 Identity:112/355 - (31%)
Similarity:181/355 - (50%) Gaps:65/355 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 GRKLSTSNTNEARDDD----STAAGNNGGAAGDGENGDPQAAQEEERKFQPN-----NHIEAELV 309
            |..:|.....|..||:    ||:.|:        |:.....:..::...:|.     ||....::
Zfish   104 GTPMSVGTLEEIIDDNHAIVSTSVGS--------EHYVSILSFVDKDLLEPGCSVLLNHKVHAVI 160

  Fly   310 DILERDI--------LQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFK--GIRRPWKGVLM 364
            .:|..|.        ::|.|:..::||..|.:..:.::|:|.||:..|:|::  ||:.| |||::
Zfish   161 GVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPP-KGVIL 224

  Fly   365 VGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDS 429
            .|.||||||:||||||.:...||..|..:.|..||.|:..|:||.||.:|..:|||.:||||||:
Zfish   225 YGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 289

  Fly   430 LCSRR-----GSESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEALRR--RL 487
            :.::|     |.|.|   .:|...|||.|:||.....:    |.|:.|||....:|.||.|  |:
Zfish   290 IGTKRYDSNSGGERE---IQRTMLELLNQLDGFDSRGD----VKVIMATNRIETLDPALIRPGRI 347

  Fly   488 EKRIYIPLPSDEGREALLKINLREVKVDDSV---DLTYVANELKGYSGADITNVCREASMMSMRR 549
            :::|..|||.::.:..:.:|:...:.|.:.|   ||....::|   |||||..:|.||.:|::| 
Zfish   348 DRKIEFPLPDEKTKRRIFQIHTSRMTVAEDVSLDDLILAKDDL---SGADIKAICTEAGLMALR- 408

  Fly   550 KIAGLTPEQIRQLATEEVDLPVSNKDFNEA 579
                            |..:.|:|:||.::
Zfish   409 ----------------ERRMKVTNEDFKKS 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kat60NP_001262276.1 Kp60-NTD 62..129 CDD:439297
PHA03291 <167..>253 CDD:223033
SpoVK 219..566 CDD:440232 107/340 (31%)
RecA-like_KTNA1 327..493 CDD:410930 72/174 (41%)
Vps4_C <570..603 CDD:462762 4/10 (40%)
psmc1bNP_001002091.1 PTZ00361 1..440 CDD:185575 112/355 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.