DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kat60 and Spast

DIOPT Version :9

Sequence 1:NP_001262276.1 Gene:Kat60 / 53566 FlyBaseID:FBgn0040208 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_008762708.1 Gene:Spast / 362700 RGDID:1308494 Length:614 Species:Rattus norvegicus


Alignment Length:592 Identity:183/592 - (30%)
Similarity:286/592 - (48%) Gaps:114/592 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 GGKQKTTTCVGMTVMAKTTFEEICENAKLARDMALTGNYDSACIYY-----------------EG 88
            ||:.::     :.|..|..||.|....::..: ...|..:.|..:|                 :|
  Rat   108 GGEAES-----VRVFHKQAFEYISIALRIDEE-EKAGQKEQAVEWYKKGIEELEKGIAVIVTGQG 166

  Fly    89 LQGLLARQLKATADPLRKGKWSMINQQISQEHAK-IKAIQRTLQ----DISLDLQSTKFAHKLRH 148
            .|...||:|:|.         .|.|..::::..: ::.:|..||    ...:..:||....:..|
  Rat   167 EQYERARRLQAK---------MMTNLVMAKDRLQLLEKLQPVLQFSKSQTDVYNESTNLTCRNGH 222

  Fly   149 QLSEESTTSKDPSAWFKPDPDIWTPPPKDPDVWGPPKPPPTTQAVGRRAAPNNRRTTPATQNSRP 213
            ..||....                          |.|..|.|.|                .||.|
  Rat   223 LQSESGAV--------------------------PKKKDPLTHA----------------SNSLP 245

  Fly   214 SSTIPQSTARNGPASTRNSRNSTSATAPSGGARTTNGRAGGRKLSTSNTNEARDDDSTAAGNNGG 278
            .|.....:...| .|..:...|.|..:...|||..:|.|......||..|......:        
  Rat   246 RSKTVMKSGSTG-LSGHHRAPSCSGLSMVSGARPGSGPAATTHKGTSKPNRTNKPST-------- 301

  Fly   279 AAGDGENGDPQAAQEEERKFQPNNHIEAELVDILERDILQKDPKVRWSDIADLHDAKRLLEEAVV 343
                     |..|..:::..:...::::.|.:::..:|:.....|::.|||....||:.|:|.|:
  Rat   302 ---------PTTAVRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQELAKQALQEIVI 357

  Fly   344 LPMLMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVR 408
            ||.|.|:.|.|:|.|.:|:|:.||||.||||||||||.|...||||:|:|:|||||.||.||:||
  Rat   358 LPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVR 422

  Fly   409 LLFEMARFYAPSTIFIDEIDS-LCSRRGSESEHEASRRVKSELLVQMDGV-GGGEEQAKVVMVLA 471
            .||.:||...||.|||||:|| ||.||  |.||:||||:|:|.|::.||| ..|:::   |:|:.
  Rat   423 ALFAVARELQPSIIFIDEVDSLLCERR--EGEHDASRRLKTEFLIEFDGVQSAGDDR---VLVMG 482

  Fly   472 ATNFPWDIDEALRRRLEKRIYIPLPSDEGREALLKINL--REVKVDDSVDLTYVANELKGYSGAD 534
            |||.|.::|||:.||..||:|:.||::|.|..||| ||  ::.......:|..:|....||||:|
  Rat   483 ATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLK-NLLCKQGSPLTQKELAQLARMTDGYSGSD 546

  Fly   535 ITNVCREASMMSMRRKIAGLTPEQIRQLATEEV-DLPVSNKDFNEAMSRCNKSVSRADLDKYEKW 598
            :|.:.::|::..:|.    |.|||::.::..|: ::.:|  ||.|::.:..:|||...|:.|.:|
  Rat   547 LTALAKDAALGPIRE----LKPEQVKNMSASEMRNIRLS--DFTESLKKIKRSVSPQTLEAYIRW 605

  Fly   599 MREFGSS 605
            .::||.:
  Rat   606 NKDFGDT 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kat60NP_001262276.1 HCV_NS5a_C <163..243 CDD:289693 13/79 (16%)
P-loop_NTPase 325..>381 CDD:304359 31/55 (56%)
AAA 358..496 CDD:214640 80/139 (58%)
AAA 362..495 CDD:278434 78/134 (58%)
Vps4_C <570..603 CDD:286426 10/32 (31%)
SpastXP_008762708.1 MIT_spastin 114..193 CDD:239142 16/88 (18%)
P-loop_NTPase 339..>395 CDD:304359 31/55 (56%)
AAA 372..508 CDD:214640 81/140 (58%)
AAA 376..506 CDD:278434 78/134 (58%)
Vps4_C <578..610 CDD:286426 10/33 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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