DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kat60 and Vps4b

DIOPT Version :10

Sequence 1:NP_001262276.1 Gene:Kat60 / 53566 FlyBaseID:FBgn0040208 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001020887.1 Gene:Vps4b / 360834 RGDID:1305969 Length:444 Species:Rattus norvegicus


Alignment Length:364 Identity:153/364 - (42%)
Similarity:212/364 - (58%) Gaps:55/364 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   274 GNNGGAAGDGENGDPQAAQEEERKFQPNNHIEAELVDILERDILQKDPKVRWSDIADLHDAKRLL 338
            ||:  :.|:.|:.||     |::|.|  |.::..:|  :||      |.|:|||:|.|..||..|
  Rat    99 GND--SDGEAESDDP-----EKKKLQ--NQLQGAIV--IER------PNVKWSDVAGLEGAKEAL 146

  Fly   339 EEAVVLPMLMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-GTTFFNVSSATLTSKYRGE 402
            :|||:||:..|..|.|.|.||:|:|:.|||||||:.||||||||. .:|||::||:.|.||:.||
  Rat   147 KEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE 211

  Fly   403 SEKMVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGVGGGEEQAKVV 467
            |||:|:.||::||...||.||||||||||..| ||:|.||:||:|:|.||||.|||...:.   :
  Rat   212 SEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGVDNDG---I 272

  Fly   468 MVLAATNFPWDIDEALRRRLEKRIYIPLPSDEGREALLKINLREVKVD-DSVDLTYVANELKGYS 531
            :||.|||.||.:|.|:|||.|||||||||....|.|:.:::|...:.. ...|...:..:..|||
  Rat   273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYS 337

  Fly   532 GADITNVCREASMMSMR--------RKIAG-------------LTPEQIRQLATEE---VDLP-- 570
            ||||:.:.|:|.|..:|        :|:.|             |||.........|   :|:|  
  Rat   338 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGD 402

  Fly   571 ------VSNKDFNEAMSRCNKSVSRADLDKYEKWMREFG 603
                  ||..|...::|....:|:..||.|.:|:..:||
  Rat   403 KLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFG 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kat60NP_001262276.1 Kp60-NTD 62..129 CDD:439297
PHA03291 <167..>253 CDD:223033
SpoVK 219..566 CDD:440232 139/314 (44%)
RecA-like_KTNA1 327..493 CDD:410930 97/166 (58%)
Vps4_C <570..603 CDD:462762 10/40 (25%)
Vps4bNP_001020887.1 MIT_VPS4 7..69 CDD:239141
RecA-like_VPS4 128..298 CDD:410929 102/179 (57%)
AAA_lid_3 325..366 CDD:465537 13/40 (33%)
Vps4_C 381..441 CDD:462762 15/59 (25%)
Blue background indicates that the domain is not in the aligned region.

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