DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kat60 and vps-4

DIOPT Version :9

Sequence 1:NP_001262276.1 Gene:Kat60 / 53566 FlyBaseID:FBgn0040208 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_490816.4 Gene:vps-4 / 189590 WormBaseID:WBGene00021334 Length:430 Species:Caenorhabditis elegans


Alignment Length:356 Identity:141/356 - (39%)
Similarity:211/356 - (59%) Gaps:50/356 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   282 DGENGDPQAAQEEERKFQPNNHIEAELVDILERDILQKDPKVRWSDIADLHDAKRLLEEAVVLPM 346
            ||:  |.....|:::|||          |.|...|:.:.|.|:|:|||.|..||..|:|||:||:
 Worm    86 DGK--DDSDEDEDKKKFQ----------DKLSGAIVMEKPNVKWTDIAGLEGAKEALKEAVILPI 138

  Fly   347 LMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG-TTFFNVSSATLTSKYRGESEKMVRLL 410
            ..|..|.|.|:||:|:|:.|||||||:.:|||||||.| :|||::||:.|.||:.|||||:|:.|
 Worm   139 KFPQLFTGNRKPWQGILLFGPPGTGKSYIAKAVATEAGESTFFSISSSDLMSKWLGESEKLVKNL 203

  Fly   411 FEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNF 475
            |.:||.:.||.|||||||||||.| |::|.|::||:|:|.:|||.|||...:.   ::||.|||.
 Worm   204 FALAREHKPSIIFIDEIDSLCSAR-SDNESESARRIKTEFMVQMQGVGLNNDG---ILVLGATNI 264

  Fly   476 PWDIDEALRRRLEKRIYIPLPSDEGREALLKINL-REVKVDDSVDLTYVANELKGYSGADITNVC 539
            ||.:|.|:|||.|||||||||....|:.:.:|:: :........|...:|...:||||.||:.:.
 Worm   265 PWILDSAIRRRFEKRIYIPLPDIHARKEMFRIDVGKNYNTLTDQDFKVLAERCEGYSGYDISILV 329

  Fly   540 REASMMSMRR--------KIAGLTPEQIRQLATEEV------------------------DLPVS 572
            ::|.|..:||        .::|.:|:....:|.:.:                        :.|:|
 Worm   330 KDALMQPVRRVQSATHFKHVSGPSPKDPNVIAHDLLTPCSPGDPHAIAMNWLDVPGDKLANPPLS 394

  Fly   573 NKDFNEAMSRCNKSVSRADLDKYEKWMREFG 603
            .:|.:.:::....:|:..|||:.|.:..:||
 Worm   395 MQDISRSLASVKPTVNNTDLDRLEAFKNDFG 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kat60NP_001262276.1 HCV_NS5a_C <163..243 CDD:289693
P-loop_NTPase 325..>381 CDD:304359 32/55 (58%)
AAA 358..496 CDD:214640 83/138 (60%)
AAA 362..495 CDD:278434 79/133 (59%)
Vps4_C <570..603 CDD:286426 8/32 (25%)
vps-4NP_490816.4 MIT_VPS4 4..79 CDD:239141
P-loop_NTPase 117..>185 CDD:304359 39/67 (58%)
AAA 150..286 CDD:214640 84/139 (60%)
AAA 154..284 CDD:278434 79/133 (59%)
Vps4_C 365..425 CDD:286426 8/59 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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