DRSC/TRiP Functional Genomics Resources

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Protein Alignment retinin and CG13059

DIOPT Version :9

Sequence 1:NP_524995.2 Gene:retinin / 53564 FlyBaseID:FBgn0040074 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_648874.2 Gene:CG13059 / 39803 FlyBaseID:FBgn0036607 Length:155 Species:Drosophila melanogaster


Alignment Length:103 Identity:29/103 - (28%)
Similarity:39/103 - (37%) Gaps:30/103 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 ILAARNGL--RTVLTIQEPAVAKVGEVVQHVPTAVSHQTQT-------------VVHDHRRLVTP 158
            :.||..||  .|...:|...:||...|.....:|::||:..             |||     ..|
  Fly    13 VAAAAPGLIAETHSIVQPAILAKTAYVDTSASSAITHQSNVNLVRKVPVVYSAPVVH-----AAP 72

  Fly   159 IV--APAVRTT--------QVIRQQPPLLWSVASDPRV 186
            :|  ||.|:|.        .||...|.|...|:|.|.|
  Fly    73 VVHAAPLVKTVIPAAPLVKTVIPAAPVLKTVVSSAPLV 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retininNP_524995.2 Retinin_C 122..>169 CDD:309599 16/69 (23%)
CG13059NP_648874.2 rne <22..152 CDD:236766 25/94 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR34931
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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