DRSC/TRiP Functional Genomics Resources

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Protein Alignment retinin and CG13044

DIOPT Version :9

Sequence 1:NP_524995.2 Gene:retinin / 53564 FlyBaseID:FBgn0040074 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_648867.1 Gene:CG13044 / 39795 FlyBaseID:FBgn0036599 Length:155 Species:Drosophila melanogaster


Alignment Length:91 Identity:38/91 - (41%)
Similarity:49/91 - (53%) Gaps:16/91 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 SADPISGRLVSAGIPVSVPLPLILAARNGLRTVLTIQEPAVAKVGEVVQHVPTAVSHQTQTVVHD 151
            :|.|  |.|.:|.:..|.|           .|...:|||.:||||.||:.||||||||:.|.||.
  Fly    15 AAKP--GHLAAAPLVYSAP-----------ATTTVVQEPVLAKVGAVVKSVPTAVSHQSLTQVHS 66

  Fly   152 HRRLVTPIVAPAVRTTQVIRQQPPLL 177
             ..:|..:|||.|:||.|  ...|:|
  Fly    67 -TPVVEDVVAPVVKTTAV--HSAPVL 89

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retininNP_524995.2 Retinin_C 122..>169 CDD:309599 27/46 (59%)
CG13044NP_648867.1 Retinin_C 36..93 CDD:282395 30/57 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45470235
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR34931
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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