DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gukh and SCAR4

DIOPT Version :9

Sequence 1:NP_732393.1 Gene:gukh / 53563 FlyBaseID:FBgn0026239 Length:1788 Species:Drosophila melanogaster
Sequence 2:NP_001318456.1 Gene:SCAR4 / 831687 AraportID:AT5G01730 Length:1170 Species:Arabidopsis thaliana


Alignment Length:1276 Identity:247/1276 - (19%)
Similarity:415/1276 - (32%) Gaps:355/1276 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 LSVRQLYTEAGKELPVATGATATALASLAHSQSLIPSRSISFNGEVLSSDHEVLQLNGSTDTEDH 300
            |:.::||..|.||.|.|. ..|.::|.|......:...| .|..||....||.|.   :|....|
plant    14 LADKELYQSADKEDPEAL-LEAASMAGLVGVLRQLGDLS-EFAAEVFHCLHEQLM---TTAARGH 73

  Fly   301 LLCV------SDFGNANRKLRTRIDAEIEIRLPAAIEDLRKWTSSEALGDVTVTP---------- 349
            .|.:      :||.:....:.::.|.......|..     :|.|.....:..::|          
plant    74 GLAMRLQHLEADFPSVEIPILSQTDHSTFFYEPGL-----EWHSDLQTKEDLISPRNLPRCIMDS 133

  Fly   350 --DC--------MHHVDTSVSTSLAIGENGILTPALSPSVLSADAVDALYA-------QNLSQAA 397
              :|        :...|.:       |....|.....||:|......|:.|       :.|.|: 
plant   134 YEECHGPPQLFLLDKFDVA-------GSGSCLKRYSDPSLLKTHTTSAVVATSKLGKDKRLRQS- 190

  Fly   398 DSSRHNHHTQALIPNDIN------------KDVPLNHRLPSPEEQTKQIALKYPAEVISVN-TSG 449
             ..:.:|.|....|.|..            :.|...||.|....:.|:..|..|    .:| :||
plant   191 -KKKGSHTTIKETPEDSRTSHAKLHQLFFLEHVENGHRNPEFHVKLKRRQLNGP----PINSSSG 250

  Fly   450 KHFQRMCAARKSTSGGYAGGATAGSSSSTSPENAGQTEGNNLDDNVQTVSRRSRSRKVRGKRRNT 514
            ..:........|.......|....||.:...|....:|..:|.......|....:||.......:
plant   251 ASYMEKFLKNSSPYCERVHGTMDQSSPAMETEVTVCSEQEDLPIPSLVYSNSGGTRKYNEMEIES 315

  Fly   515 IAG--------------IDQKE----IQDAANGNGESKNASNATSPVAPAQQAETTSSDAKKS-- 559
            |||              :::|.    ::.:::.|...|..::|.||.:...:.:...||.|..  
plant   316 IAGHEILEIPFVPHEITVNEKSPVVCLESSSSVNLCCKTNNDADSPASTESEVKEAGSDDKAGCD 380

  Fly   560 ---KKFGRSK--------SSDILKKESAALPY--DKGKSTLTRLNSLKQWGRNRFKFMHRTGELG 611
               ..||:.:        .:::|.:.|..|.:  ::|:|:|.                       
plant   381 HGFPGFGQPQICTNAEVNQTEVLTQFSNVLRHSPEEGESSLL----------------------- 422

  Fly   612 DQLDTSGCSSQNSSAEKADSHHGSPAGDNSKRDIDDECVVHHLVAQKSESRFSHERKPSYSSSEK 676
                   |:....::.::..|....|.    .|:|:                        |.|:.
plant   423 -------CTDIQRASPESKPHKAEEAA----VDLDE------------------------SFSQM 452

  Fly   677 SISVSSSGQLRGRLQLSSGPMAAAHVKMRETATLNRQRRNGLHALAGKEEQPHSSSGNWSASSES 741
            :..:.|:|.  |.|::...|.:                   |.........|..|..:....|..
plant   453 TPDIDSAGM--GTLEILQTPFS-------------------LSCYESPANLPEDSGSHLELQSNK 496

  Fly   742 GRASIGS--EITMQPKSSAS-STSLNVSSFQPGGAGSGPPSSMLSRRRFLNTSAS---------- 793
            ..|....  |:...|..:.| .|.|...:..|..|..|..:.:.|:..|...:||          
plant   497 ANAEACEVFEVRRDPMLNISPETHLLKVTQVPQDAYEGGTNDVHSQHVFSVETASEISVSALVED 561

  Fly   794 --SSVTS---EGTATPELQAEAGAY---------------------PGH----LDDETSSAYSCD 828
              ||:|:   |...:.::.:|||.:                     |.|    .|:....:.|.|
plant   562 QFSSITNQEIEALESEDISSEAGHFIPDTKKSLNETSVALESDFLLPNHYISTFDNFEDLSLSAD 626

  Fly   829 TEGYYTSFHMDSGLRTLKEEEPSVMPGT---PLQTSLHTSSYSFGSQSNQTVLNAESEYELF-GR 889
            .:.|...          ||:|.:...|:   |.| |.|.|:....|::.  .|.:::..:|. |.
plant   627 AQDYAAP----------KEDETNSQDGSSMNPAQ-SKHISTSEISSENG--TLMSDTPRDLHTGY 678

  Fly   890 GSTSTTTSSAGTVCTALMSGAASGPDVPERSSSLGKHSGQSRSQSTSASSSTLERSYSSSTIGST 954
            ||.|.:        :.|..|.|: ||:.|.||..|:...|:.|..:..||.........:.....
plant   679 GSLSAS--------SCLEDGLAN-PDLAEISSYSGQEDPQTMSIVSDDSSDPEVPIPDGTCFAGD 734

  Fly   955 LERTGTIKRNVKMSPTKAGGEVTEKDDQQDQDQQQQLEFSE---SSD--LEGVERIERIKQKTAL 1014
            ::.......|.|...|     |.:|:.:...|.|:.|..:|   ||:  |:...:.:....:|..
plant   735 VDHDNQTGLNNKAIET-----VPQKELETISDPQESLLGTEECLSSEYCLQIQNQRQESPSETGS 794

  Fly  1015 TSKRIPSMCIITPTTSDDDEHQTNDPNRTLTSLTIDVEHGEQDEDEA----EQKTPTNSKDHNLN 1075
            .:.|          ||.|:...|.:.:..:.|..:||......|.||    .|:..|:..|| ::
plant   795 ANSR----------TSSDESPPTQNGSVGVQSSPLDVFPSSITEIEALHAPYQEIFTSLNDH-IS 848

  Fly  1076 ELKQTPTKALSGMFEKLRV---KLVPGKSS----PAKN-----QMQPKPAN----SSAVNDDELY 1124
            |  ...:|.|:...:.|.|   .::|..:|    |..|     .:.|.|..    ...|...|:.
plant   849 E--SVLSKGLTDEEDFLNVSPESILPLSTSLHETPQANPEITPPLPPLPPTQWWMGKLVESTEMP 911

  Fly  1125 DLAGEYVTIADISNNNNNNKNIGR-RNTGMGIYYSNDIVSKRVEPSTSAVSE--------YVSLN 1180
            .|||          :.||:.||.| .||..|...:|:    ...||..:|::        |...:
plant   912 SLAG----------SGNNSFNIQRDENTQNGSVQANE----AQYPSEVSVTDGENHNFHIYTEES 962

  Fly  1181 ELPQHLRRHAVSSRSAPAAESESCAQQQLPVEPAAATSQPPPLPLGGRTQGVG----------DG 1235
            :..:......|:..|....||:.....:.|.:..:.......|....||:.:.          ..
plant   963 KATEEQSPSGVNGTSDTYMESKHKCLNRTPEDSFSLAESAQGLEADWRTEAMALEWFSQNLREHN 1027

  Fly  1236 VPMYAEIGELSE------EKPLASAANRRLRPN-------AEGKLVYDSDSL----------KRR 1277
            .|..|::.|...      |||..:...:.||.|       ..|||..|.|:|          |..
plant  1028 NPHPAKLEEEEPQVDHPLEKPGQTKFRQTLRDNNSYNQNQKAGKLKRDEDTLVIGIDRSMLRKVS 1092

  Fly  1278 KGAHTTFAPGPYVKETESALHSAESAAAAIASSQDPSAASG 1318
            :|..|..  |..|.|.:|.|....|.:..:.    |:.|||
plant  1093 EGNRTHV--GARVDENDSLLEIIRSKSFNLR----PADASG 1127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gukhNP_732393.1 NHS <818..>846 CDD:291922 4/27 (15%)
SCAR4NP_001318456.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12902
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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