DRSC/TRiP Functional Genomics Resources

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Protein Alignment gukh and SCAR

DIOPT Version :9

Sequence 1:NP_732393.1 Gene:gukh / 53563 FlyBaseID:FBgn0026239 Length:1788 Species:Drosophila melanogaster
Sequence 2:NP_001260368.1 Gene:SCAR / 34519 FlyBaseID:FBgn0041781 Length:674 Species:Drosophila melanogaster


Alignment Length:759 Identity:161/759 - (21%)
Similarity:264/759 - (34%) Gaps:208/759 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 EFDSISNITLSNALRQLASLVLIASDIFDDLQRDLQAVGERAGRVQRKIAAVERRVCAYDPKTVT 202
            |.::::|.||:|.:|||:||...|.|:|.:|.||:..:|:||..:|.:|..:..:|...|.....
  Fly    27 ELETVTNTTLTNIIRQLSSLSKHAEDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEE 91

  Fly   203 VPESDLLTFAQRKHHFETDKSFQQELFTGETRPLSVRQLYTEAGKELPVATGATATALASLAHSQ 267
            ||.:|:    .||..|::.|.|.|::|:..|.|..:...|.:..|..|:               .
  Fly    92 VPLTDI----TRKKAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPL---------------D 137

  Fly   268 SLIPSRSISFNG----------------EVLSSDHEVL-----QLN---------GSTDTEDHLL 302
            .|...|....:|                |:|.....|:     :||         |:.       
  Fly   138 KLNVYRDDGKDGLKFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAA------- 195

  Fly   303 CVSDFGNANRKLRTRIDAEIEIRLPAAIEDLRKWTSSEAL--GDVTV-------TPDCMHHVDTS 358
                 |..|:|.:|:      ||:|   .:.|:.....||  |:..:       ||:.|.:.:..
  Fly   196 -----GRGNKKQKTK------IRVP---HNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAG 246

  Fly   359 VSTSL----AIGENGILTPALSPSVLSA--------DAVDALYAQN-LSQAADSSRHNHHTQALI 410
            ....|    .:||..|   .|..|.|.|        ..||.:...| ||...::|.....|...|
  Fly   247 YGIQLVKIQTVGEADI---DLRHSTLDAHHQVVGNIQDVDTVKPYNMLSHLENNSNVTKQTAVAI 308

  Fly   411 PNDINKDVPLNHRLPSPEEQTKQIALKYPAEVISVNTSGKHFQRMCAARKSTSGGYAGGATAGSS 475
                 .|:.:....| |...:.::...|.:|.|..:|..:...:|.....:|.|...||......
  Fly   309 -----ADMGVYDTRP-PRPNSIELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGGPQQMHM 367

  Fly   476 SSTSPENAGQTEGNNLDDNVQTVSRRSRSRKV-------RGKRRNTIAGIDQKEIQDAANGN-GE 532
            ......:||..:.:.|..  ||.........:       |.|.|.:     |......:||: |.
  Fly   368 QHQQMYDAGMYQSHALYG--QTGQGVMSPEPIYGPGTPSRNKPRPS-----QPPPAPPSNGSGGG 425

  Fly   533 SKNASNATSP----------------------VAPAQQAETTSSDAKKSKKFGRSKSSDILKKES 575
            :..||||.:|                      ::|.......:|....:|..||:.||     ..
  Fly   426 TPTASNANTPTRGRSMSTSRDALPPPPPVPDVISPMSGMNGVNSGHMAAKLLGRANSS-----SG 485

  Fly   576 AALP---YDKGKSTLTRLNSLKQWGRNRFKFMHRTGELGDQLDTSGCSSQNSSAEKADSHHGSPA 637
            |..|   .:.....:|:|:       |.|   |..|..|:||::  .|.........|.|  || 
  Fly   486 AGSPNSVQNANDMVMTQLS-------NTF---HSIGMTGNQLNS--LSDLPPPPPVPDQH--SP- 535

  Fly   638 GDNSKRDIDDECVVHHLVAQKSESRFSHERKPSYSSSEKSISVSSSGQLRGRLQLSSGPMAAAHV 702
                               :.|....:....|.....|:.:...:...||....|   |.:.|:.
  Fly   536 -------------------KMSPPNAAPPPPPPPPPVEEGMGSGNQHTLRPHQIL---PKSLANG 578

  Fly   703 KMRETATLNRQRRNGL-HALAGKEEQP--HSSSGNWSASSESGRASIGSEITMQPKSSASSTSLN 764
            :|::..     ::||: |.:|.|:..|  |....:...:...|......|.:.|.:...::..|:
  Fly   579 EMQQPG-----QQNGVPHIVAPKKMLPPFHDPRNDLMKAIRDGITLRKVEKSEQKEIERNAAPLD 638

  Fly   765 VSSFQPGGAGSGPPSSMLSRRRFLNTSAS----SSVTSEGTATP 804
            |             :|:|:||..:..|.|    |...|||...|
  Fly   639 V-------------ASILARRVAIELSESEDSDSEDDSEGWMEP 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gukhNP_732393.1 NHS <818..>846 CDD:291922
SCARNP_001260368.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12902
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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