DRSC/TRiP Functional Genomics Resources

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Protein Alignment cmet and Kif3a

DIOPT Version :10

Sequence 1:NP_524993.3 Gene:cmet / 53561 FlyBaseID:FBgn0040232 Length:2189 Species:Drosophila melanogaster
Sequence 2:XP_006246409.1 Gene:Kif3a / 84392 RGDID:621536 Length:726 Species:Rattus norvegicus


Alignment Length:962 Identity:244/962 - (25%)
Similarity:383/962 - (39%) Gaps:340/962 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KNASSIQVCIKVRP--------CEPGLTSLWQVKERRSIHLADSHAEP---YVFDYVFDEGASNQ 57
            ::..:::|.::.||        |.....|:.:::...::|..||..||   :.||.||...:...
  Rat    10 ESCDNVKVVVRCRPLNEREKSMCYRQAVSVDEMRGTITVHKTDSSNEPPKTFTFDTVFGPESKQL 74

  Fly    58 EVFDRMAKHIVHACMQGFNGTIFAYGQTSSGKTYTMMGDEQNP---GVMVLAAKEIFQQIS-SET 118
            :|::..|:.|:.:.::|:||||||||||.:|||:||.|....|   ||:..:...||..|: :|.
  Rat    75 DVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAVPGLRGVIPNSFAHIFGHIAKAEG 139

  Fly   119 ERDFLLRVGYIEIYNEKIYDLLNK-KNQDLKIHESGN-GIVNVNCEECIITSEVDLLRLLCLGNK 181
            :..||:||.|:|||||::.|||.| :.|.|::.|..: |:...:....::.:..|:.|::.||:|
  Rat   140 DTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHK 204

  Fly   182 ERTVGETNMNERSSRSHAIFKIIIESRKSDHSDDDAVIQSVLNLVDLAGSERADQTGARGARLKE 246
            .|:||.|||||.||||||||.|.||..:.....:..|....|:|||||||||..:|||.|.||||
  Rat   205 NRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNMHVRMGKLHLVDLAGSERQAKTGATGQRLKE 269

  Fly   247 GGHINKSLLFLSNVIKSLSENADNRFTN--YRDSKLTRILQASLGGNAFTSIICTIKPS--IMEE 307
            ...||.||..|.|||.:|   .|.:.|:  ||:|||||:||.|||||:.|.:...|.|:  ..:|
  Rat   270 ATKINLSLSTLGNVISAL---VDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDE 331

  Fly   308 SQSTLSFATRAKKIRIKPQVNEMVSDATMMKRLEREIKVLKDKLAE------------EERKNEN 360
            :.|||.:|.|||.|:.|.::||...|| ::::.::||:.||.||.|            ||..||.
  Rat   332 TISTLRYANRAKNIKNKARINEDPKDA-LLRQFQKEIEELKKKLEEGEEVSGSDISGSEEDDNEE 395

  Fly   361 QQKVEHLERQIKHDMHKIICGHSLSDKGQQKRRRTWCPTASGSHLELAETGTTEDRIDQFPKVSH 425
            .:                     |.:.|:::::|....::|.|.                ...|.
  Rat   396 GE---------------------LGEDGEKRKKRRGSSSSSSSD----------------STCSV 423

  Fly   426 LPKPVFFHTSNAGKRWDNIPKTINILGSLDIGTESNSISEEFLPAECIDFGSPRPDVLKPMLTIR 490
            :.||:                                  :||||.:.                  
  Rat   424 IEKPL----------------------------------DEFLPHQA------------------ 436

  Fly   491 QLPDLPLTPKGPLTTDKIKKEIQDLQMFTSLEKHFEVECEEVQGLKEKLAEVTAQRDNLEQESLA 555
                      |       ||::.                      .:|:.|:.|:.|        
  Rat   437 ----------G-------KKKVS----------------------PDKMMEMQAKID-------- 454

  Fly   556 EKERYDALEKEVTSLRADNEAANSKISELEEKLSTLKQTMRIMEVENQVAVGLEFEFEAHKKSSK 620
              |...|||   |.|..:.|..|...:|||.                                  
  Rat   455 --EERKALE---TKLDMEEEERNKARAELER---------------------------------- 480

  Fly   621 LRVDDLLSALLEKESTIESLQKSLDNLTRDVLRNSKEGHMLSIAPEQEDIAGDSICNKCEELEKL 685
             |..|||.|..|.:|.:|.|..    |.:.|:                 :.|..:..|.||.|||
  Rat   481 -REKDLLKAQQEHQSLLEKLSA----LEKKVI-----------------VGGVDLLAKAEEQEKL 523

  Fly   686 IADLESKKNSCECDQLRLEIVSVRDKLESVESAFNLASSEIIQKATDCERLSKELSTSQNAFGQL 750
            :.:                                 ::.|:.::....|:|.|||...:      
  Rat   524 LEE---------------------------------SNMELEERRKRAEQLRKELEEKE------ 549

  Fly   751 QERYDALDQQWQAQQAGITTLHEKHEHVQEKYQKLQEEYEQLESRARS------ASSAEFQRLQN 809
            |||.|                      ::|||..||||.:....:.:.      |:.:|...||.
  Rat   550 QERLD----------------------IEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQ 592

  Fly   810 DNTKFQADIASLNERLEEAQNMLTEVQNSESTVEKLRIQNHELTAKIKELETNFEEMQREY---- 870
            ::   |.:|..|.|.:.:.        :.|..::.|.|.|.        :..:::||...|    
  Rat   593 EH---QREIEGLLENIRQL--------SRELRLQMLIIDNF--------IPQDYQEMIENYVHWN 638

  Fly   871 --------DCLS---NQLMESV-----QENDALREEIKQRPTSHVEESMRSS 906
                    .|::   |.:.:..     :|.|....::.....::.|||:|.|
  Rat   639 EDIGEWQLKCVAYTGNNMRKQTPVPDKKERDPFEVDLSHVYLAYTEESLRQS 690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cmetNP_524993.3 Motor_domain 8..321 CDD:473979 138/333 (41%)
SMC_prok_B 539..1431 CDD:274008 73/394 (19%)
SMC_prok_B 1137..1926 CDD:274008
YhaN 1717..2182 CDD:443752
Kif3aXP_006246409.1 KISc_KIF3 13..345 CDD:276822 138/334 (41%)
Smc <451..>615 CDD:440809 57/304 (19%)
Blue background indicates that the domain is not in the aligned region.

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