DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cmet and AT4G24170

DIOPT Version :9

Sequence 1:NP_524993.3 Gene:cmet / 53561 FlyBaseID:FBgn0040232 Length:2189 Species:Drosophila melanogaster
Sequence 2:NP_001320052.1 Gene:AT4G24170 / 828517 AraportID:AT4G24170 Length:1004 Species:Arabidopsis thaliana


Alignment Length:1130 Identity:300/1130 - (26%)
Similarity:481/1130 - (42%) Gaps:253/1130 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IQVCIKVRP-----------CEPGLTSLWQVKERRSI-----HLADSHAEPYVFDYVFDEGASNQ 57
            |.|.::|||           |:      |:.....:|     :|.|..:  |.||.||......:
plant     7 ILVSVRVRPLNEKEKTRNDRCD------WECINDTTIICKFHNLPDKSS--YTFDKVFGFECPTK 63

  Fly    58 EVFDRMAKHIVHACMQGFNGTIFAYGQTSSGKTYTMMGDEQNPGVMVLAAKEIFQQISS-ETERD 121
            :|:|..||.:....:.|.|.:|||||||||||||||      .|:...|..:||..|.. :.||.
plant    64 QVYDDGAKEVALCVLSGINSSIFAYGQTSSGKTYTM------SGITEFAMDDIFAYIDKHKQERK 122

  Fly   122 FLLRVGYIEIYNEKIYDLL-NKKNQDLK-IHESGNGIVNVNCEECIITSEVDLLRLLCLGNKERT 184
            |.|:...:|||||.:.||| ...:..|: :.:...|.|.....|..:.....|..||.:...:|.
plant   123 FTLKFSAMEIYNEAVRDLLCEDSSTPLRLLDDPERGTVVEKLREETLRDRSHLEELLSICETQRK 187

  Fly   185 VGETNMNERSSRSHAIFKIIIESRKSDHS-DDDAVIQSVLNLVDLAGSERADQTGARGARLKEGG 248
            :|||::||.|||||.|.::.|||.....| :..|.:.:.:..|||||||||.||.:.|:|||||.
plant   188 IGETSLNEISSRSHQILRLTIESSSQQFSPESSATLAASVCFVDLAGSERASQTLSAGSRLKEGC 252

  Fly   249 HINKSLLFLSNVIKSLSENADNRFTNYRDSKLTRILQASLGGNAFTSIICTIKP--SIMEESQST 311
            |||:|||.|..||:.||: ..|....|||||||||||.||||||.|:||||:.|  |.:|:|::|
plant   253 HINRSLLTLGTVIRKLSK-GKNGHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHLEQSRNT 316

  Fly   312 LSFATRAKKIRIKPQVNEMVSDATMMKRLEREIKVLKDKLAEEERKN------------------ 358
            |.|||.||::....|||.:||:..::|:|:||:..:     |.|.||                  
plant   317 LLFATCAKEVTTNAQVNLVVSEKALVKQLQRELARM-----ENELKNLGPASASSTSDFYALMLK 376

  Fly   359 ENQQKVEHLERQIKHDMHKIICGHSLSDKGQQKRRRTWCPTASGSHLELAETGTTEDRIDQFPKV 423
            :.::.:..:|.||          |.|.          |....:.|.:|.....|.|:|.......
plant   377 QKEELIAKMEEQI----------HELK----------WQRDVAQSRVENLLKSTAEERSSSSSMD 421

  Fly   424 SHLPKPVFFHTSNAGKRWDNIPKTINILGSLDIGTESNSISEE---FLPAECIDFGSPRPDVLKP 485
            |...:..:..|.     :|. |:.:|.||      :||..|.:   ||    :|..:|       
plant   422 SRRRRISYDSTD-----FDE-PRMLNNLG------KSNLYSPDEDGFL----LDDTTP------- 463

  Fly   486 MLTIRQLPDLPLTPKGPLTTDKIKKEIQDLQMFTSLEKHFEVECEEVQGLKEKLAEVTAQRDNLE 550
                 |.|...|..|.........:|.:|...        ||.|.||...:.:..::   :|:| 
plant   464 -----QFPGHNLHDKWEEMAQSTTQEPEDACK--------EVRCIEVNSGEAERVQI---QDSL- 511

  Fly   551 QESLAEKERYDALEKEVTSLRADNEAANSKISELEEKLSTLKQTMRIMEVENQVAVGLEFEFEAH 615
             :.:.||:.|   |:...|.:.|   |:|.|..::.:||...:.    |.|:.|:|         
plant   512 -DDIVEKKEY---EQNYESQKDD---ADSSIKNIDMELSLYTKP----EAEDGVSV--------- 556

  Fly   616 KKSSKLRVDDLLSALLEKESTIESLQKSLDNLTRDVLRNSKEGHMLSIAPEQEDIAGDSICNKCE 680
            ||        |:..:.|.|.::|..::|                     |::|::......:..|
plant   557 KK--------LIEDVQETEQSVEKQKQS---------------------PKKEEMEQYLSRDMSE 592

  Fly   681 ELEKLIADLESKKNSCECDQLRLEIVSVRDKLES--VESAFNLASSEIIQKATDCERLSKELSTS 743
            ::.|.:.:.|      :|    ::.....||||:  |.:...|..|:..:::.:.|...|.||:.
plant   593 QVTKSLPEEE------QC----VQEYGAYDKLEAQDVLTINKLEESQQTEQSVEKEDTKKNLSSK 647

  Fly   744 QNAFGQLQERYDALDQQWQAQQAGITTLHEKHEHVQEKYQKLQEEYEQLESRARSASSAEFQRLQ 808
            :.   .|::.. ::||..|..::            ..:.:|..|.||..:              :
plant   648 KE---DLKQNL-SMDQSEQLYKS------------PPEDEKCVEVYEGSD--------------K 682

  Fly   809 NDNTKFQADIASLNERLEEAQNMLTEVQNSESTVEKLRIQNHELTAKIKELETNFEEMQREYDCL 873
            :||| ::|    |.::::|.|..:....:.:|..||.....:.:...:...|  :.:|:|...|.
plant   683 DDNT-YEA----LKKKVKEMQKTIEYFMSIQSAEEKQSPSFNIIDDTLSPGE--YFKMRRSRSCR 740

  Fly   874 SNQLMESVQENDALR----EEIKQRPTSHVEESMRSSGISSDFDEQKQDINLLHQFVQLSESVQQ 934
            .|.|........|.|    |.......|.:..||.:..| .|.|.:... :..|:|:   ..:::
plant   741 ENLLFTKAAAAAASRGFIFETTNTSFDSDITVSMDAQSI-KDSDTETSS-SSFHEFM---AGLRE 800

  Fly   935 IELQHHSGISRLFRANQMKLDQSEPGLKLCLESAEYIEEDNRQSDATE--PICLKGFLKRHRFQI 997
            ..:||||..|.......||.:.::.|       .|..|.:.:||...|  .:|....:.|..|.:
plant   801 RTMQHHSTHSDDTDTKTMKPENTDDG-------GEKTEFERQQSQIIELWQVCNVPLVHRTYFFL 858

  Fly   998 KRLSQEHVDMGEEKRLLDIISQLEQEIEEKSALMEATEATINEMREQMTNLESALLEKSVIINKV 1062
                   :..|:..   |.: .:|.|:...|.|.::||.:..:..:.:|. |...|.|. |.||.
plant   859 -------LFKGDPS---DFV-YMEVELRRLSFLKDSTETSRKQTAKAVTR-EREWLAKQ-IPNKF 910

  Fly  1063 EDYQRQIESLEKQNAEMTMVYEELQ 1087
            ...::: |..:|...|::.....||
plant   911 GKKEKE-EVYKKWGVELSSKRRSLQ 934

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cmetNP_524993.3 KISc 8..328 CDD:214526 140/340 (41%)
Motor_domain 8..321 CDD:277568 139/333 (42%)
Smc <680..1449 CDD:224117 86/416 (21%)
TMPIT 779..>867 CDD:285135 15/87 (17%)
Smc 1042..1910 CDD:224117 12/46 (26%)
AT4G24170NP_001320052.1 KISc_CENP_E 6..326 CDD:276825 139/333 (42%)
PTZ00121 <473..724 CDD:173412 67/356 (19%)
DUF3490 831..980 CDD:403272 27/118 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0242
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47968
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.870

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