DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cmet and neb

DIOPT Version :9

Sequence 1:NP_524993.3 Gene:cmet / 53561 FlyBaseID:FBgn0040232 Length:2189 Species:Drosophila melanogaster
Sequence 2:NP_476817.1 Gene:neb / 35293 FlyBaseID:FBgn0004374 Length:1121 Species:Drosophila melanogaster


Alignment Length:1296 Identity:285/1296 - (21%)
Similarity:495/1296 - (38%) Gaps:458/1296 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSAKNASSIQVCIKVRP-----CEPG-LTSLWQVKERRSIHL---ADSHAEP-------YVFDYV 49
            :|....|::.|.::|||     |..| :|::.|| ...|..|   |.|.|:.       :.:|.|
  Fly   113 LSVSEESNMIVAVRVRPLNALECTRGQVTNVVQV-HGNSNELTVQAGSSADASAGVTHFFSYDQV 176

  Fly    50 F-------DEGASNQEVFDRMAKHIVHACMQGFNGTIFAYGQTSSGKTYTMMGDE---------- 97
            :       ...|...:||:..|:.::....:|:|..:||||||.|||:|:|||.|          
  Fly   177 YYSCDPERKNFACQAKVFEGTARPLIDTAFEGYNACLFAYGQTGSGKSYSMMGIEALDDAALDGG 241

  Fly    98 ---QNPGVMVLAAKEIFQQI---SSETERDFLLRVGYIEIYNEKIYDLLN--------------- 141
               ...|::.....|:|::|   .|:.:....:.|.|.|||||||:|||:               
  Fly   242 PPHDEAGIIPRFCHELFRRIEAVKSQQQLQVEVEVSYFEIYNEKIHDLLSVQHAAAATGESTPIQ 306

  Fly   142 ----KKNQDLKIHES---GNGIVNVNCEECIITSEVDLLRLLCLGNKERTVGETNMNERSSRSHA 199
                ::...||:.|.   |..:|:::...  :.|...|...|.:||.:|....|.||::|||||:
  Fly   307 QQQQQQRPALKVREHPIFGPYVVDLSAHS--VDSYSALRNWLAVGNSQRATASTAMNDKSSRSHS 369

  Fly   200 IFKIIIESRKSDHSDDDAVI---------------QSVLNLVDLAGSERADQTGARGARLKEGGH 249
            ||.|::  ..:|.|.||.:.               :|.::|||||||||...:|:.|.|::||..
  Fly   370 IFNIVL--NLTDLSSDDGLSSDTDSSTASSLRQTRRSKISLVDLAGSERISVSGSNGERIREGVS 432

  Fly   250 INKSLLFLSNVIKSLSENADNR---------------FTNYRDSKLTRILQASLGGNAFTSIICT 299
            ||||||.|..||.:|   ||:|               |..||:|.||.:|:.:||||:.|.::.|
  Fly   433 INKSLLTLGKVIAAL---ADSRKAIANGPLGSGTPSTFVPYRESVLTWLLRENLGGNSKTVMLAT 494

  Fly   300 IKPSIM--EESQSTLSFATRAKKIRIKPQVNEMVSDATMMKRLEREIKVLKDKLAEEERKNENQQ 362
            |.|:.:  :|:.:||.:|.:|:.|..:.:|||...|           |:::|..||.:|..    
  Fly   495 ISPASIHADETLATLRYACKARSIVNRVKVNESPHD-----------KIIRDLRAEVDRLK---- 544

  Fly   363 KVEHLERQIKHDMHKIICGHSLSDKGQQKRRRTWCPTASGSHLELAETGTTEDRIDQFPKVSHLP 427
                                ||.::.:::||.:                                
  Fly   545 --------------------SLRNEYERQRRLS-------------------------------- 557

  Fly   428 KPVFFHTSNAGKRWDNIPKTINILGSLDIGTESNSISEEFLPAECIDFGSPRPDVLKPMLTIRQL 492
                                         |..:|.:              ||..:::        
  Fly   558 -----------------------------GNSNNPV--------------PRKIIIE-------- 571

  Fly   493 PDLPLTPKGPLTTDKIKKEIQDLQMFTSLEKHFEVECEEVQGLKEKLAEVTAQRDNLEQESLAEK 557
                                      ||:::      .||:.|:::|||                
  Fly   572 --------------------------TSVDE------TEVEALRQQLAE---------------- 588

  Fly   558 ERYDALEKEVTSLRADNEAANSKISELEEKLSTLKQTMRIMEVENQVAVGLEFEFEAHKKSS--- 619
                 .|:|:      :.|..|.:.:|:|.....|..:|:::..     ||..|..|.:|.:   
  Fly   589 -----REREL------SRAQKSWMEKLKEAEDQRKSELRVLKRR-----GLALELTAEQKQACLV 637

  Fly   620 KLRVDDLLSALLEKESTIESLQKSLDNLTR------------DVLRNS------------KEGHM 660
            .|..|.:||..|     ...|.:.|..:.|            |::.:.            :.|..
  Fly   638 NLTADPILSGTL-----FYLLPQGLVRIGRGRLPGGSSSSQPDIVLDGPLVALQHCSIEHERGGK 697

  Fly   661 LSIAPEQEDIAGDSICNKCEELEKLIADLESKKNSCECDQLRL----------EIVSVRDKLESV 715
            |.:.|..||.  ::..|  .||      |:.::.....|:|.:          ...|.|.|.:..
  Fly   698 LYVIPGSEDF--ETYVN--GEL------LKDRRQLFHGDRLVIGGSHYFRISNPFCSQRGKADHP 752

  Fly   716 ESAFNLASSEIIQKATDCERLSKELSTSQNAFGQLQERYDALDQQWQAQQAGITTL-HEKHEHVQ 779
            .. |.||..||:||..  ::|..||...                    ::|.:|.: .|:.:|.:
  Fly   753 VD-FQLAHQEILQKQE--QQLRSELEAE--------------------KRAALTKIEQERAQHAR 794

  Fly   780 EKYQKLQ----EEY------EQLESRARSASSAEFQRLQNDNTKFQ-----ADIASLNERLEEAQ 829
            :..::||    |::      |.||:..::.:.|:    |.::|..:     :..|..:..||:.|
  Fly   795 DFEERLQCLELEQFKYKCNSEMLETERQALALAQ----QQEHTPLRHEDAVSTPAQKSTILEDIQ 855

  Fly   830 NMLTEVQNSESTVEKLRIQNHELTAKIKELETNFEEMQREYDCLSNQLMESVQENDALREEI--- 891
            .::  :..||.::.|.::...|.|.:.::|:...|..|          .::..|...||..|   
  Fly   856 RIM--LNPSEESLHKTQLMVKEATQRCRQLDLPLEFRQ----------TQTPDEFGLLRTVILIL 908

  Fly   892 -KQR------PTSHVEESMRSSGISSDF----DEQKQDINLLHQFVQLSESVQQIELQHHSGISR 945
             |||      ||:.:       |:..|.    .||::.:|....|..:....:.::...:..:|.
  Fly   909 DKQRGLKAEWPTARL-------GVWLDLVRDNAEQQEKLNATTIFQSVEVDWEPLDADLNETLSD 966

  Fly   946 LFRANQMKLDQS--------EPGLKLCLESAEYIEEDNRQSDATEPICLKGFLKRHRFQIKRLSQ 1002
            ...::::.|:.|        :| ||..|.::.......||:....|    |....| |..:.|:.
  Fly   967 THNSSRIALNLSAMKDVLLNKP-LKRLLNASSSKSNTPRQTSTPSP----GSQLVH-FTKRLLTY 1025

  Fly  1003 EHVDMGEEKRLLDIISQLEQEIEEKSALMEATEATINEMREQMTNLESALLEKSVIINKVEDYQR 1067
            :..::.|.:.....:.|.|.:|.::||         ..:|.   :.|:||||:       |::| 
  Fly  1026 DPEEIPESQSSFTTLVQQELQIMQRSA---------QRLRR---HCEAALLER-------ENHQ- 1070

  Fly  1068 QIESLEKQNAEMTMVYEELQDRV-TRESSMSESLLRVPPDEDTLPGCPTSPSRREQEVATL 1127
                   .|..:.:..:|...|: |..:.|..||.|.   |.|  .|.|||::.::.|..|
  Fly  1071 -------DNGVLAVSLQEALARMDTVLNGMHTSLARA---EAT--ACVTSPTKTQKAVRFL 1119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cmetNP_524993.3 KISc 8..328 CDD:214526 128/412 (31%)
Motor_domain 8..321 CDD:277568 127/405 (31%)
Smc <680..1449 CDD:224117 102/497 (21%)
TMPIT 779..>867 CDD:285135 20/102 (20%)
Smc 1042..1910 CDD:224117 24/87 (28%)
nebNP_476817.1 KISc_KIF1A_KIF1B 119..525 CDD:276816 129/413 (31%)
KISc 120..525 CDD:214526 128/412 (31%)
Kinesin_assoc 524..657 CDD:292801 44/319 (14%)
FHA 634..740 CDD:238017 20/120 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45437996
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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