DRSC/TRiP Functional Genomics Resources

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Protein Alignment cmet and Kif5c

DIOPT Version :9

Sequence 1:NP_524993.3 Gene:cmet / 53561 FlyBaseID:FBgn0040232 Length:2189 Species:Drosophila melanogaster
Sequence 2:NP_001101200.1 Gene:Kif5c / 311024 RGDID:1308539 Length:955 Species:Rattus norvegicus


Alignment Length:1110 Identity:284/1110 - (25%)
Similarity:472/1110 - (42%) Gaps:255/1110 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SIQVCIKVRPCEP-----GLTSLWQVKERRSIHLADSHAEPYVFDYVFDEGASNQEVFDRMAKHI 67
            ||:|..:.||...     |...:.:.|...::.:  ...:|||||.|.....:.::|::..||.|
  Rat     8 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVI--GQGKPYVFDRVLPPNTTQEQVYNACAKQI 70

  Fly    68 VHACMQGFNGTIFAYGQTSSGKTYTMMG---DEQNPGVMVLAAKEIFQQISSETER-DFLLRVGY 128
            |...::|:|||||||||||||||:||.|   |.|..|::...|.:||..|.|..|. :|.::|.|
  Rat    71 VKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSY 135

  Fly   129 IEIYNEKIYDLLNKKNQDLKIHESGNGIVNV-NCEECIITSEVDLLRLLCLGNKERTVGETNMNE 192
            .|||.:||.|||:....:|.:||..|.:..| .|.|..::|..:::.::..|...|.|..|||||
  Rat   136 FEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNE 200

  Fly   193 RSSRSHAIFKIIIESRKSDHSDDDAVIQSVLNLVDLAGSERADQTGARGARLKEGGHINKSLLFL 257
            .|||||:||.|.|   |.::.:.:..:...|.||||||||:..:|||.||.|.|..:|||||..|
  Rat   201 HSSRSHSIFLINI---KQENVETEKKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSAL 262

  Fly   258 SNVIKSLSENADNRFTNYRDSKLTRILQASLGGNAFTSIICTIKPSIMEESQ--STLSFATRAKK 320
            .|||.:|:|..... ..|||||:|||||.|||||..|:|:....||:..|::  |||.|..|||.
  Rat   263 GNVISALAEGTKTH-VPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKT 326

  Fly   321 IRIKPQVNEMVSDATMMKRLEREIKVLKDKLAEEERKNENQQKV-EHLERQIKHDMHKIICGHSL 384
            |:....||           ||...:..|.|..:|:.||:..:.| :|||.::..           
  Rat   327 IKNTVSVN-----------LELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNR----------- 369

  Fly   385 SDKGQQKRRRTWCPTASGSHLELAETGTTEDRIDQFPKVSHLPKPVFFHTSNAGKRWDNIPKTIN 449
                       |   .:|..:...|..:.:|:.:..|                   .||.|...|
  Rat   370 -----------W---RNGEAVPEDEQISAKDQKNLEP-------------------CDNTPIIDN 401

  Fly   450 ILGSLD-IGTESNSISEEFLPAECIDFGSPRPDVLKPMLTIRQLPDLPLTPKGPLTTDKIKKEIQ 513
            |...:| |..|.....||...                  ..|||.|         ..|:|.::.|
  Rat   402 ITPVVDGISAEKEKYDEEITS------------------LYRQLDD---------KDDEINQQSQ 439

  Fly   514 DLQMFTSLEKHFEVECEEVQGLKEKLAEVTAQRDNLEQESLAEKER-YDALEKEVTSLRADNEAA 577
                                 |.|||.:....:|.|    ||...| |:.:::|:|.|:.:||||
  Rat   440 ---------------------LAEKLKQQMLDQDEL----LASTRRDYEKIQEELTRLQIENEAA 479

  Fly   578 NSKISELEEKLSTLKQTMRIMEVENQVAVGLEFEFEAHKKSSKLRVDD-LLSALLEKESTIESLQ 641
            ..::.|:.:.|..|               .:.::.::.:...|.|.:: |...|.:|.:|:.:.|
  Rat   480 KDEVKEVLQALEEL---------------AVNYDQKSQEVEDKTRANEQLTDELAQKTTTLTTTQ 529

  Fly   642 KSLDNLTRDVLRNSKEGHMLSI----APEQEDIAGDSICNKCEELEKLIADLESKKNSCECDQLR 702
            :.|..|..  |.|.::.....|    ..:..:|.|....|..:.|..:...:|.     |....|
  Rat   530 RELSQLQE--LSNHQKKRATEILNLLLKDLGEIGGIIGTNDVKTLADVNGVIEE-----EFTMAR 587

  Fly   703 LEIVSVRDKLESVESAFNLASSEIIQKATDCER----LSKELSTSQNAFGQLQERYDALDQQWQA 763
            |.|..::.:::|:.:    .|.::....||..|    ..:||:..|....|.:.:..:|....|.
  Rat   588 LYISKMKSEVKSLVN----RSKQLESAQTDSNRKMNASERELAACQLLISQHEAKIKSLTDYMQN 648

  Fly   764 QQAGITTLHEKHEHVQEKYQKL--QEEYEQLESR------------ARSASSAEFQRLQNDNTKF 814
            .:.....|.|..:.:.|:..||  ||:..::..:            |.....|..|::::.....
  Rat   649 MEQKRRQLEESQDSLSEELAKLRAQEKMHEVSFQDKEKEHLTRLQDAEEVKKALEQQMESHREAH 713

  Fly   815 QADIASLNERLEEAQNMLTEVQNSESTVEKLRIQNHELTAKIKELETNFEEMQREYDCLSNQLME 879
            |..::.|.:.:||.|.::.|:::..   :||:::...|::...:|:  .|:.:||.......|:.
  Rat   714 QKQLSRLRDEIEEKQRIIDEIRDLN---QKLQLEQERLSSDYNKLK--IEDQEREVKLEKLLLLN 773

  Fly   880 SVQENDALREEIKQRPTSHVEESMRSSGISSDFDEQKQDI-NLLHQFVQ-LSESVQQIELQHHSG 942
            ..:|.  .||::|              |:......:.|.: ||...||| |:..|::        
  Rat   774 DKREQ--AREDLK--------------GLEETVSRELQTLHNLRKLFVQDLTTRVKK-------- 814

  Fly   943 ISRLFRANQMKLDQSEPGLKLCLESAEYIEEDNRQSDATEPICLKGFLKRHRFQIKRLSQEHVDM 1007
                    .::||..:.|.....:......|:|          |:...|.|    |:|.:::.|:
  Rat   815 --------SVELDSDDGGGSAAQKQKISFLENN----------LEQLTKVH----KQLVRDNADL 857

  Fly  1008 GEEKRLLDIISQLEQEIEEKSALMEATEATINEMREQMTNLESALLEKSVIINKVED---YQRQI 1069
            ..|      :.:||:.:...:..::|.|:.:.|.:|                |.:.|   ||:::
  Rat   858 RCE------LPKLEKRLRATAERVKALESALKEAKE----------------NAMRDRKRYQQEV 900

  Fly  1070 ESLEK 1074
            :.:::
  Rat   901 DRIKE 905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cmetNP_524993.3 KISc 8..328 CDD:214526 138/331 (42%)
Motor_domain 8..321 CDD:277568 137/324 (42%)
Smc <680..1449 CDD:224117 76/418 (18%)
TMPIT 779..>867 CDD:285135 19/101 (19%)
Smc 1042..1910 CDD:224117 5/36 (14%)
Kif5cNP_001101200.1 KISc_KHC_KIF5 6..327 CDD:276820 137/324 (42%)
KISc 8..334 CDD:214526 138/331 (42%)
Lebercilin 605..798 CDD:292252 39/213 (18%)
BAR 636..817 CDD:299863 39/217 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000669
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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