DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cmet and Kif18b

DIOPT Version :9

Sequence 1:NP_524993.3 Gene:cmet / 53561 FlyBaseID:FBgn0040232 Length:2189 Species:Drosophila melanogaster
Sequence 2:XP_008766505.1 Gene:Kif18b / 303575 RGDID:1310360 Length:841 Species:Rattus norvegicus


Alignment Length:745 Identity:201/745 - (26%)
Similarity:325/745 - (43%) Gaps:169/745 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SSIQVCIKVRP----------------------------CEPGLTSL-WQ------VKERRSIHL 36
            |.::|.::|||                            |:.|...| |.      .|:.:.:  
  Rat     8 SVVRVVVRVRPPTPKELESQRRPVIQVVDERMLVFDPEECDGGFPGLKWSGSLSGPKKKGKDL-- 70

  Fly    37 ADSHAEPYVFDYVFDEGASNQEVFDRMAKHIVHACMQGFNGTIFAYGQTSSGKTYTMMGDEQNPG 101
                  .:|||.||.|.|:.|:||.....:|:.:.:||:|.::||||.|.:|||:||:|.|.:||
  Rat    71 ------TFVFDRVFSEVATQQDVFQHTTHNILDSFLQGYNCSVFAYGATGAGKTHTMLGREGDPG 129

  Fly   102 VMVLAAKEIFQQISS-ETERDFLLRVGYIEIYNEKIYDLLNKKNQDLKIHES-GNGIVNVNCEEC 164
            :|.|...|:::::.: :.|:.|.:.:.|:|:|||:|||||..|. .|.|.|. ..|:|.......
  Rat   130 IMYLTTMELYRRLEACQEEKQFEVLISYLEVYNEQIYDLLEPKG-PLTIREDPDKGVVVPGLSFH 193

  Fly   165 IITSEVDLLRLLCLGNKERTVGETNMNERSSRSHAIFKIIIESRKSDHSDDDAVIQSVLNLVDLA 229
            ...|...||.:|..||..||...|:.|..||||||||:|.::.:........|:..:.::|:|||
  Rat   194 QPASAQQLLEMLTRGNCSRTQHPTDANATSSRSHAIFQIFVKQQDRVPGLTQALRVAKMSLIDLA 258

  Fly   230 GSERADQTGARGARLKEGGHINKSLLFLSNVIKSLSENADNRFTN--YRDSKLTRILQASLGGNA 292
            |||||..|.|:|.||:||.:||:|||.|.||:.:|:: |..|.::  ||||||||:|:.|:|||.
  Rat   259 GSERASSTHAKGERLREGANINRSLLALINVLNALAD-AKGRKSHVPYRDSKLTRLLKDSIGGNC 322

  Fly   293 FTSIICTIKPSIM--EESQSTLSFATRAKKIRIKPQVNEMVSD------ATMMKRLEREIKVLKD 349
            .|.:|..:.||.:  |::.:||.:|.|||:||:..:.|.:..|      ||:.::|:.|:..|::
  Rat   323 RTVMIAAVSPSSLTYEDTYNTLKYADRAKEIRLTLKSNVISLDHHISQYATICQQLQAEVAALRE 387

  Fly   350 KLAEEERKNENQQKVEHLERQIKHDMHKIICGHSLSDKGQQKRRRTWCPTASGSHLELAETGTTE 414
            ||...|..                       ..:|..:..|..:.:.....|.|.|:...  :::
  Rat   388 KLQTYEAG-----------------------AQALQQRSPQPPKLSIPQNLSSSPLQPGH--SSQ 427

  Fly   415 DRIDQFPKVSHLPKPVFFHTSNAGKRWDNIPKTINILGSLDIGTESNSISEEFLPAECIDFGSPR 479
            ....:|......|:.....|.:.|:                 ||...:..|:..|.:...|.:..
  Rat   428 SCAPEFHAKYDAPQEESLGTDSQGQ-----------------GTVEENAPEQEQPPQDKQFPTQM 475

  Fly   480 PDVLKPMLTIRQLPDLPLTPKGPLTTDKIKKEIQDLQMFTSLEKHFEVECEEVQGLKEKLAEVTA 544
            |:           |:||.:|                             |..||. |:.:.:.:.
  Rat   476 PE-----------PNLPGSP-----------------------------CPTVQA-KQGMNQHSL 499

  Fly   545 QRDNLEQESLAEKERYDALEKEVTSLRADNEAANSKISELEEKLSTLKQTMRIMEVEN------- 602
            ||.:.|.............:::.:.|:|.|......|||.|    ||:|.:....:|:       
  Rat   500 QRLDAEHSKQLALRVLRLAQRQYSLLQAANLLTPDMISEFE----TLQQLVLEESMEHGAESPRS 560

  Fly   603 -QVAVGLEFEFEAHKKSSKLRVDDLLSALLEKEST------IESLQKSLDNLTRDVLRNSKEGHM 660
             .:|.|:....|...:||:..:...|.....:||:      ..::.|.|..||          |.
  Rat   561 PGLARGIPLAQELCSESSECPLSLSLRPACSQESSRYCGPVTRTMAKQLSGLT----------HT 615

  Fly   661 LSIAPEQEDIAGDSICNKCEELEKLIADLE 690
            |.| |...|...|....|..:.:|...:||
  Rat   616 LGI-PLAPDCTSDKTSQKPTKEKKRKLNLE 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cmetNP_524993.3 KISc 8..328 CDD:214526 131/360 (36%)
Motor_domain 8..321 CDD:277568 129/353 (37%)
Smc <680..1449 CDD:224117 3/11 (27%)
TMPIT 779..>867 CDD:285135
Smc 1042..1910 CDD:224117
Kif18bXP_008766505.1 KISc 18..360 CDD:214526 128/351 (36%)
KISc_KIP3_like 18..353 CDD:276821 126/344 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0242
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.