DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cmet and kif5c

DIOPT Version :9

Sequence 1:NP_524993.3 Gene:cmet / 53561 FlyBaseID:FBgn0040232 Length:2189 Species:Drosophila melanogaster
Sequence 2:XP_002935337.3 Gene:kif5c / 100493873 XenbaseID:XB-GENE-977474 Length:959 Species:Xenopus tropicalis


Alignment Length:1109 Identity:294/1109 - (26%)
Similarity:482/1109 - (43%) Gaps:278/1109 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 AEPYVFDYVFDEGASNQEVFDRMAKHIVHACMQGFNGTIFAYGQTSSGKTYTMMG---DEQNPGV 102
            ::|||||.||....:.:.|:...||.||...:.|:|||||||||||||||:||.|   |.|..|:
 Frog    44 SKPYVFDKVFPSNTTQEHVYSACAKQIVKDVLDGYNGTIFAYGQTSSGKTHTMEGKLHDHQMMGI 108

  Fly   103 MVLAAKEIFQQISSETER-DFLLRVGYIEIYNEKIYDLLNKKNQDLKIHESGNGIVNV-NCEECI 165
            :...|.:||..|.|..|. :|.::|.|.|||.:||.|||:....:|.:||..|.:..| .|.|..
 Frog   109 IPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPFVKGCTERF 173

  Fly   166 ITSEVDLLRLLCLGNKERTVGETNMNERSSRSHAIFKIIIESRKSDHSDDDAVIQSVLNLVDLAG 230
            ::|..:::.::..|...|.|..|||||.|||||:||.|.|   |.::.:.:..:...|.||||||
 Frog   174 VSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINI---KQENVETEKKLSGKLYLVDLAG 235

  Fly   231 SERADQTGARGARLKEGGHINKSLLFLSNVIKSLSENADNRFTNYRDSKLTRILQASLGGNAFTS 295
            ||:..:|||.||.|.|..:|||||..|.|||.:|:|..... ..|||||:|||||.|||||..|:
 Frog   236 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKTH-VPYRDSKMTRILQDSLGGNCRTT 299

  Fly   296 IICTIKPSIMEESQ--STLSFATRAKKIRIKPQVNEMVSDATMMKRLEREIKVLKDKLAEEERKN 358
            ||....|||..|::  |||.|..|||.|:....||..::.....|:.|:|    |||  .:..||
 Frog   300 IIICCSPSIFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKE----KDK--TKSLKN 358

  Fly   359 ENQQKVEHLERQIKHDMHKIICGHSLSDKGQQKRRRTWCPTASGSHLELAETGTTEDRIDQFPKV 423
                .::|||.::..                      |   ..|..:.:.|..:.:|:....|  
 Frog   359 ----IIQHLEMELNR----------------------W---RRGEAVPVDEQTSAKDQKTLEP-- 392

  Fly   424 SHLPKPVFFHTSNAGKRWDNIPKTIN-ILGSLDIGTESNSISEEFLPAECIDFGSPRPDVLKPML 487
                             .||.|...| ::|:.:|.:|.....:|       |..|          
 Frog   393 -----------------CDNTPVIDNGLVGATNISSEEKKKYDE-------DIAS---------- 423

  Fly   488 TIRQLPDLPLTPKGPLTTDKIKKEIQDLQMFTSLEKHFEVECEEVQGLKEKLAEVTAQRDNLEQE 552
            ...||.|         ..|:|.::.|                     |.|||     ::..|:||
 Frog   424 LYGQLDD---------KDDEINQQSQ---------------------LIEKL-----KQQMLDQE 453

  Fly   553 SLAEKER--YDALEKEVTSLRADNEAANSKISELEEKLSTL--KQTMRIMEVENQVAVGLEFEFE 613
            .|....|  |:.:::|:|.|:.:|:||..::.|:.:.|..|  ....:..|||::..:..:...|
 Frog   454 ELLASTRRDYEKIQEELTRLQIENDAAKDEVKEVLQALEELAVNYDQKSQEVEDKTKLNEQLSEE 518

  Fly   614 AHKKSSKLRVDDL-LSALLE-----KESTIESLQKSLDNL--------TRDVLRNSKEGHM---- 660
            ..:|::.|.|... ||.|.|     ::.|.|.|...|.:|        |.||...::...:    
 Frog   519 LTQKTTNLTVTQRELSQLQELSNHQRKRTTEILNLLLKDLGEIGGIVGTNDVKTLAEVNGVIEEE 583

  Fly   661 -----LSIAPEQEDIAGDSICNKCEELEKLIADLESKKNSCECDQLRLEIVSVRDKLESVESAFN 720
                 |.|:..:.::  .|:.|:.::||....:...|.|:.|.:....:::|.:.:.:       
 Frog   584 FTMARLYISKMKSEV--KSLVNRSKQLESAQIEANRKINASEKELAACQLLSSQHEAK------- 639

  Fly   721 LASSEIIQKATDCERLSKELSTSQNAFGQLQERYDALDQQWQAQQAGITTLHEKHEHVQEKYQKL 785
                  |:..||      .:...:....||:|..|||:::       :..|     |.|||..|:
 Frog   640 ------IKSLTD------YMQNMEQRRRQLEEAQDALNEE-------LARL-----HAQEKMHKV 680

  Fly   786 QEEYEQLESRARSASSAEF-----QRLQNDNTKFQADIASLNERLEEAQNMLTEVQNSESTVEKL 845
            ..:.::.|...|...:.|.     |::::.....|..::.|.:.:||.|.|:.::::..   :||
 Frog   681 SFQDKEKEHLTRLQDAEEIKKTLEQQMESHREAHQKQLSRLRDEIEEKQKMIDDLKDLN---QKL 742

  Fly   846 RIQNHELTAKIKELETNFEEMQREYDCLSNQLMESVQENDALREEIKQRPTSHVEESMRSSGISS 910
            ::|..:||:..::|:|  ||.|||.|.....|:...:|..  ||::|                  
 Frog   743 QLQLDKLTSDYEKLKT--EEEQREEDLQKLVLLNEKREQS--REDLK------------------ 785

  Fly   911 DFDEQKQDINLLHQFVQLSESVQQIELQHHSGISRLFRANQMKLDQSEPGLKLCLESAEYIEEDN 975
                            .|.|:|.: |||....:.:||..:          |.|.::....::.||
 Frog   786 ----------------GLEETVAR-ELQTLHNLRKLFIQD----------LALRVQKRVELDSDN 823

  Fly   976 RQSDATEPICLKGFLKRHRFQI----KRLSQEHVDMGEEKRLLDIISQLEQEIEEKSALMEATEA 1036
            ....|.:...: .||:.:..|:    |:|.:::.|:..|      :.:||:.:...:..::|.|.
 Frog   824 GGGSAAQKQKI-SFLENNLEQLTKVHKQLVRDNADLRCE------LPKLEKRLRATAERVKALEG 881

  Fly  1037 TINEMREQMTNLESALLEKSVIINKVEDYQRQIESLEKQNAEMTMVYEELQDRVTRESSMSESLL 1101
            .:.|.:|                |.:.|.:|               |::..||: :|:..::::.
 Frog   882 ALKEAKE----------------NAMRDRRR---------------YQQEVDRI-KEAVRAKNIA 914

  Fly  1102 RVPP 1105
            |..|
 Frog   915 RRAP 918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cmetNP_524993.3 KISc 8..328 CDD:214526 134/293 (46%)
Motor_domain 8..321 CDD:277568 133/286 (47%)
Smc <680..1449 CDD:224117 84/435 (19%)
TMPIT 779..>867 CDD:285135 23/92 (25%)
Smc 1042..1910 CDD:224117 10/64 (16%)
kif5cXP_002935337.3 KISc_KHC_KIF5 6..327 CDD:276820 133/286 (47%)
COG4372 469..>673 CDD:226809 48/236 (20%)
SMC_prok_B 580..>912 CDD:274008 86/455 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000669
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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